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The map label for this gene is clpS [H]

Identifier: 150396335

GI number: 150396335

Start: 1185528

End: 1185881

Strand: Direct

Name: clpS [H]

Synonym: Smed_1116

Alternate gene names: 150396335

Gene position: 1185528-1185881 (Clockwise)

Preceding gene: 150396334

Following gene: 150396336

Centisome position: 31.35

GC content: 54.8

Gene sequence:

>354_bases
ATGATCGCCATGCCGGTCCGGATGCAGCAGGGAAGCGATGGAAACGGAGGCGGCCCGAATCGTGGCACGTCCGTCATCAC
GCGCACCAAGCCGAAGACCAAGAAGCCGAGTTTGTATCGCGTTCTGCTTTTGAATGACGATTACACGCCAATGGAATTCG
TCATTCACATCCTCGAACGCTTCTTTCAGAAGGACCGGGAAGAGGCGACCACCATAATGCTACATGTCCACAACCACGGC
GTTGGAGAATGCGGCGTCTTCACCTACGAGGTCGCCGAAACCAAGGTGACGCAGGTGATGGATTTCGCCAGGCAGCATCA
ACACCCGTTGCAATGCGTCATGGAAAAGAAATGA

Upstream 100 bases:

>100_bases
TCGGTTCGGTCTTAAAATCCAGGAACGAACTATTAGATAAGGGCGAGTACGTCGTGGCCAAAAGCATAAGGATCCGCGGC
CGTCAAAGGAATGAACAAGA

Downstream 100 bases:

>100_bases
GGAACTAACGTGCCAACATTTTCGCCCAGCCTCGAAAAGGCGCTGCATCAGGCACTGACTTTTGCCAACGAGCGCCATCA
TGAATATGCGACGCTCGAGC

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MIAMPVRMQQGSDGNGGGPNRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERFFQKDREEATTIMLHVHNHG
VGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK

Sequences:

>Translated_117_residues
MIAMPVRMQQGSDGNGGGPNRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERFFQKDREEATTIMLHVHNHG
VGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK
>Mature_117_residues
MIAMPVRMQQGSDGNGGGPNRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERFFQKDREEATTIMLHVHNHG
VGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=56.1797752808989, Blast_Score=112, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 13373; Mature: 13373

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAMPVRMQQGSDGNGGGPNRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILER
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FFQKDREEATTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK
HHHCCHHCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MIAMPVRMQQGSDGNGGGPNRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILER
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FFQKDREEATTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK
HHHCCHHCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]