Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 150395700

GI number: 150395700

Start: 513759

End: 514574

Strand: Direct

Name: yeaM [H]

Synonym: Smed_0475

Alternate gene names: 150395700

Gene position: 513759-514574 (Clockwise)

Preceding gene: 150395694

Following gene: 150395701

Centisome position: 13.58

GC content: 62.38

Gene sequence:

>816_bases
ATGCCGATATCCGATGGAAGCTACCTGCCGAAGTTGCCCGACGCTGACCATTTCAGAAGCCTGGAATGGATCGAGAAGGC
GAACGCACCCGTTCTGGCGATTGGGAAGGATTACGCATGCGGCCTCGTCGTGCCTCCCCACAGCCATAGCCGGACCCAAC
TCTGGTGGGCGCGTTCAGGCGTTGTGCTCGTCTACACCTCGGGCGGGCGCTGGATGATCCCTCCCGGTCATGCCCTGCTG
ATCCCCGCGGGAATTGAGCACTCGGCCGAGATGGTCAGCGACGTCCGCATGCATTCGACTTACATACCGCCAGAGGCAAG
CGAAGCGCGCCGGCCTCTCGTGTTGGAGATGAGCCCGCTCGTCGGCAGTCTCATCGACGAACTTATCGTTGCAGGGAACG
AAGCATCTACCGAGAAGCGCGAGAGCCTGATCATGGAATTGCTGCTCACGGAAATCCCTCGGCTCTCTCAGAGGCCTCTG
GGTCTGCCTTTCCCGCGGGACCGCAAGCTTGCGGTTATCTGTCGGCAATTTGTCGAGGCGCCGTCGGCATCCGCGAGCAT
CGATGCGTGGGCGGCGAGCATGGGCATCAGCCGACGTTCTTTTACGCGGCTCTTCCGGCAGGAGACGGGCGTCAGCTTCG
GCACATGGCGGCAGCAGGCCTGCATCTTCGCTTCGCTGCCTCGCATTGCCGACGGTGAACCGATAACCACGGTTGCGTTG
GATGCCGGTTACGAGAACGTCGCTGCCTTCACGACCATGTTCCGCCGCATGCTCGGCGCGCCGCCCAGCGTCTATCTACG
CGACCAGCGGACCTGA

Upstream 100 bases:

>100_bases
TCGGGGCGGCTCGCCAGGGGAGCCGTTTCGGCTCATCTCTAAACGGCTTGCCGCTGGCCTGCTTTTGTGATTTGGTCGAT
TTCTTTCGCGAGTGGGCCAG

Downstream 100 bases:

>100_bases
CCGACCATCGTCCCGTCACTGGCGCCGCGGACTACTGCATGTTTCATTTAATCGGATCCGACTGGAGGACAAAAACATGC
AGCATATCAAGTGCTACAGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPISDGSYLPKLPDADHFRSLEWIEKANAPVLAIGKDYACGLVVPPHSHSRTQLWWARSGVVLVYTSGGRWMIPPGHALL
IPAGIEHSAEMVSDVRMHSTYIPPEASEARRPLVLEMSPLVGSLIDELIVAGNEASTEKRESLIMELLLTEIPRLSQRPL
GLPFPRDRKLAVICRQFVEAPSASASIDAWAASMGISRRSFTRLFRQETGVSFGTWRQQACIFASLPRIADGEPITTVAL
DAGYENVAAFTTMFRRMLGAPPSVYLRDQRT

Sequences:

>Translated_271_residues
MPISDGSYLPKLPDADHFRSLEWIEKANAPVLAIGKDYACGLVVPPHSHSRTQLWWARSGVVLVYTSGGRWMIPPGHALL
IPAGIEHSAEMVSDVRMHSTYIPPEASEARRPLVLEMSPLVGSLIDELIVAGNEASTEKRESLIMELLLTEIPRLSQRPL
GLPFPRDRKLAVICRQFVEAPSASASIDAWAASMGISRRSFTRLFRQETGVSFGTWRQQACIFASLPRIADGEPITTVAL
DAGYENVAAFTTMFRRMLGAPPSVYLRDQRT
>Mature_270_residues
PISDGSYLPKLPDADHFRSLEWIEKANAPVLAIGKDYACGLVVPPHSHSRTQLWWARSGVVLVYTSGGRWMIPPGHALLI
PAGIEHSAEMVSDVRMHSTYIPPEASEARRPLVLEMSPLVGSLIDELIVAGNEASTEKRESLIMELLLTEIPRLSQRPLG
LPFPRDRKLAVICRQFVEAPSASASIDAWAASMGISRRSFTRLFRQETGVSFGTWRQQACIFASLPRIADGEPITTVALD
AGYENVAAFTTMFRRMLGAPPSVYLRDQRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=258, Percent_Identity=30.2325581395349, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29938; Mature: 29807

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISDGSYLPKLPDADHFRSLEWIEKANAPVLAIGKDYACGLVVPPHSHSRTQLWWARSG
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCEEEEECCC
VVLVYTSGGRWMIPPGHALLIPAGIEHSAEMVSDVRMHSTYIPPEASEARRPLVLEMSPL
EEEEEECCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEHHH
VGSLIDELIVAGNEASTEKRESLIMELLLTEIPRLSQRPLGLPFPRDRKLAVICRQFVEA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
PSASASIDAWAASMGISRRSFTRLFRQETGVSFGTWRQQACIFASLPRIADGEPITTVAL
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
DAGYENVAAFTTMFRRMLGAPPSVYLRDQRT
ECCCHHHHHHHHHHHHHHCCCCCEEEECCCC
>Mature Secondary Structure 
PISDGSYLPKLPDADHFRSLEWIEKANAPVLAIGKDYACGLVVPPHSHSRTQLWWARSG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCEEEEECCC
VVLVYTSGGRWMIPPGHALLIPAGIEHSAEMVSDVRMHSTYIPPEASEARRPLVLEMSPL
EEEEEECCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEHHH
VGSLIDELIVAGNEASTEKRESLIMELLLTEIPRLSQRPLGLPFPRDRKLAVICRQFVEA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
PSASASIDAWAASMGISRRSFTRLFRQETGVSFGTWRQQACIFASLPRIADGEPITTVAL
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
DAGYENVAAFTTMFRRMLGAPPSVYLRDQRT
ECCCHHHHHHHHHHHHHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]