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The map label for this gene is glcF [H]

Identifier: 150395621

GI number: 150395621

Start: 425463

End: 426755

Strand: Direct

Name: glcF [H]

Synonym: Smed_0396

Alternate gene names: 150395621

Gene position: 425463-426755 (Clockwise)

Preceding gene: 150395620

Following gene: 150395624

Centisome position: 11.25

GC content: 64.11

Gene sequence:

>1293_bases
TTGCAGACCAATTTCTCCCCTGAGCAACTCGCCGACCCGCATGTCGCCGAATCCGAAACGATTCTGCGCAAATGCGTGCA
TTGCGGCTTCTGCACGGCCACCTGTCCTACCTATGTGGTTCTTGGCGACGAACTGGACAGTCCGCGCGGACGGATTTACC
TGATCAAGGACATGCTCGAAAACGGCCGTGCCGCGGATACCGAAACCGTTACCCATATCGACCGCTGTCTGTCGTGTCTT
TCCTGCATGACCACCTGTCCCTCGGGCGTCGACTATATGCATCTCGTCGACCATGCCCGCGTTCACATCGAGAAGACGTA
TAAGCGGCCGTTCAAGGATCGGCTCGCCCGTTCCGTCATTGCCGCGACGCTTCCCTATCCGTCCCGCTTCCGGCTGGCCC
TCGGGGCCGCGGGTCTTGCACGGCCGCTTGCCGGATTGCTGAAAAGGGTGCCCTTTCTCAGGACATTCGGCATCATGCTG
GATCTGGCGCCGGCCGCGCTACCGGTATCGCGGGCGGCAAGGCCGGCTGTCTACGCTGCAAAGGGCACGCCGCGCGCGCG
CGTCGCCTTGCTGACCGGTTGCGCTCAGCCGGTGCTGCGGCCGGAGATCAACGATGCGACCATCCGTCTCCTCACCGGAC
AAGGCGTCGAGGTGGTTGTTTCGGCGGGAGAGGGCTGTTGCGGAGCGCTCGTCCATCACATGGGACGGGAGGAGCAGGCG
CTGCAGGCCGCCCGGCACAACGTCGATGTATGGCTCAAGGTGGCGGAGGAGGATGGCCTCGACGCAATCATCGTCACCGC
TTCCGGCTGTGGCACCACGATAAAGGATTACGGTCACATGCTGCGGCTCGACCCGACCTATGCGGAGAAGGCCGCGCGCG
TTTCCGCACTGGCGAAGGACGTGACCGAATATCTCGCGACCCTCGACCTGCCGGAGCGCGAGCCGCGTGGCCTTACGGTC
GCCTATCACTCCGCCTGCTCGATGCAGCACGGACAGAGGATCGCCGCGGCCCCGAAGCAGCTCCTGAAACGCGCCGGCTT
CTCGGTGCGCGAGCCGGCCGAGGGCCATCTCTGTTGCGGCTCGGCCGGGACCTACAACATCCTGCAGCCGGAGATATCTG
CGAAGCTGAAGGCGCGGAAGGTCCGGAACATTGAGGCGACCAGGGCCGACGTCATCGCCACCGGCAATATCGGCTGTATC
ACGCAGATCGCCAGCGGGACGGAGATCCCGATCCTGCACACGGTGGAACTGCTCGATTGGGCCTATGGCGGCTCGAAACC
GGTGGGGCTCTGA

Upstream 100 bases:

>100_bases
GGTCTTAAAGATCGGCCTAAGACGAGTATGGCAATTTCCGAACAGTGCAACGGGGATCAGATCTATCCCAAGGCCGCAAG
GCGTCAAATGGAGTACTCGG

Downstream 100 bases:

>100_bases
CGAGGGTTTTGGCAAGGCCCTTATCCGCCTGCCGTCATCTTCTCCCCGTCAGACGGGGAGAAGATCGTGACAGCCGCATG
AGAGGCCGCACGCGGCGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MQTNFSPEQLADPHVAESETILRKCVHCGFCTATCPTYVVLGDELDSPRGRIYLIKDMLENGRAADTETVTHIDRCLSCL
SCMTTCPSGVDYMHLVDHARVHIEKTYKRPFKDRLARSVIAATLPYPSRFRLALGAAGLARPLAGLLKRVPFLRTFGIML
DLAPAALPVSRAARPAVYAAKGTPRARVALLTGCAQPVLRPEINDATIRLLTGQGVEVVVSAGEGCCGALVHHMGREEQA
LQAARHNVDVWLKVAEEDGLDAIIVTASGCGTTIKDYGHMLRLDPTYAEKAARVSALAKDVTEYLATLDLPEREPRGLTV
AYHSACSMQHGQRIAAAPKQLLKRAGFSVREPAEGHLCCGSAGTYNILQPEISAKLKARKVRNIEATRADVIATGNIGCI
TQIASGTEIPILHTVELLDWAYGGSKPVGL

Sequences:

>Translated_430_residues
MQTNFSPEQLADPHVAESETILRKCVHCGFCTATCPTYVVLGDELDSPRGRIYLIKDMLENGRAADTETVTHIDRCLSCL
SCMTTCPSGVDYMHLVDHARVHIEKTYKRPFKDRLARSVIAATLPYPSRFRLALGAAGLARPLAGLLKRVPFLRTFGIML
DLAPAALPVSRAARPAVYAAKGTPRARVALLTGCAQPVLRPEINDATIRLLTGQGVEVVVSAGEGCCGALVHHMGREEQA
LQAARHNVDVWLKVAEEDGLDAIIVTASGCGTTIKDYGHMLRLDPTYAEKAARVSALAKDVTEYLATLDLPEREPRGLTV
AYHSACSMQHGQRIAAAPKQLLKRAGFSVREPAEGHLCCGSAGTYNILQPEISAKLKARKVRNIEATRADVIATGNIGCI
TQIASGTEIPILHTVELLDWAYGGSKPVGL
>Mature_430_residues
MQTNFSPEQLADPHVAESETILRKCVHCGFCTATCPTYVVLGDELDSPRGRIYLIKDMLENGRAADTETVTHIDRCLSCL
SCMTTCPSGVDYMHLVDHARVHIEKTYKRPFKDRLARSVIAATLPYPSRFRLALGAAGLARPLAGLLKRVPFLRTFGIML
DLAPAALPVSRAARPAVYAAKGTPRARVALLTGCAQPVLRPEINDATIRLLTGQGVEVVVSAGEGCCGALVHHMGREEQA
LQAARHNVDVWLKVAEEDGLDAIIVTASGCGTTIKDYGHMLRLDPTYAEKAARVSALAKDVTEYLATLDLPEREPRGLTV
AYHSACSMQHGQRIAAAPKQLLKRAGFSVREPAEGHLCCGSAGTYNILQPEISAKLKARKVRNIEATRADVIATGNIGCI
TQIASGTEIPILHTVELLDWAYGGSKPVGL

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=428, Percent_Identity=41.8224299065421, Blast_Score=327, Evalue=1e-90,
Organism=Escherichia coli, GI1786497, Length=242, Percent_Identity=26.8595041322314, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788576, Length=417, Percent_Identity=24.9400479616307, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 46363; Mature: 46363

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNFSPEQLADPHVAESETILRKCVHCGFCTATCPTYVVLGDELDSPRGRIYLIKDMLE
CCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCEEEEECCCCCCCCCEEEEEHHHHC
NGRAADTETVTHIDRCLSCLSCMTTCPSGVDYMHLVDHARVHIEKTYKRPFKDRLARSVI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AATLPYPSRFRLALGAAGLARPLAGLLKRVPFLRTFGIMLDLAPAALPVSRAARPAVYAA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHCCHHHCCCCEEEEE
KGTPRARVALLTGCAQPVLRPEINDATIRLLTGQGVEVVVSAGEGCCGALVHHMGREEQA
CCCCCHHHHHHHHHCCHHCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHCCCHHHH
LQAARHNVDVWLKVAEEDGLDAIIVTASGCGTTIKDYGHMLRLDPTYAEKAARVSALAKD
HHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHHHHHH
VTEYLATLDLPEREPRGLTVAYHSACSMQHGQRIAAAPKQLLKRAGFSVREPAEGHLCCG
HHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEC
SAGTYNILQPEISAKLKARKVRNIEATRADVIATGNIGCITQIASGTEIPILHTVELLDW
CCCCCCEECCHHHHHHHHHHHHCCHHCCCCEEEECCCHHHHHHCCCCCCCHHHHHHHHHH
AYGGSKPVGL
HCCCCCCCCC
>Mature Secondary Structure
MQTNFSPEQLADPHVAESETILRKCVHCGFCTATCPTYVVLGDELDSPRGRIYLIKDMLE
CCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCEEEEECCCCCCCCCEEEEEHHHHC
NGRAADTETVTHIDRCLSCLSCMTTCPSGVDYMHLVDHARVHIEKTYKRPFKDRLARSVI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AATLPYPSRFRLALGAAGLARPLAGLLKRVPFLRTFGIMLDLAPAALPVSRAARPAVYAA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHCCHHHCCCCEEEEE
KGTPRARVALLTGCAQPVLRPEINDATIRLLTGQGVEVVVSAGEGCCGALVHHMGREEQA
CCCCCHHHHHHHHHCCHHCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHCCCHHHH
LQAARHNVDVWLKVAEEDGLDAIIVTASGCGTTIKDYGHMLRLDPTYAEKAARVSALAKD
HHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHHHHHH
VTEYLATLDLPEREPRGLTVAYHSACSMQHGQRIAAAPKQLLKRAGFSVREPAEGHLCCG
HHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEC
SAGTYNILQPEISAKLKARKVRNIEATRADVIATGNIGCITQIASGTEIPILHTVELLDW
CCCCCCEECCHHHHHHHHHHHHCCHHCCCCEEEECCCHHHHHHCCCCCCCHHHHHHHHHH
AYGGSKPVGL
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8606183; 9278503 [H]