BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

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The map label for this gene is fabG [H]

Identifier: 150395593

GI number: 150395593

Start: 393257

End: 394036

Strand: Direct

Name: fabG [H]

Synonym: Smed_0368

Alternate gene names: 150395593

Gene position: 393257-394036 (Clockwise)

Preceding gene: 150395592

Following gene: 150395595

Centisome position: 10.4

GC content: 60.38

Gene sequence:

>780_bases
ATGACAGACTTTCTCAACCTGAGAGGCAAGCGAGCCCTCATCACTGCTGGAACCAAGGGCGCCGGCGCTGCGACCGTCAG
CCTGTTTCGGGAACTCGGCGCGCAGGTGTTGACGACCGCGCGCGCGCGCCCTGAGAACCTGCCGGAAGAATTGTTTGTCG
AGGCCGATCTCACGACTGAAGAGGGGTGCGCGGCCGTCGTGGACGTTGCGCGTCAACGTCTCGGCAACATCGATATCATC
GTTCATATGCTGGGTGGCTCGTCAGCAGCCGGCGGTGGCTTTCGGGCGCTAACTGATGCCGAGTGGCAGAAAGAAATGTC
TCTCAATCTTTTTCCCGCTGTTCGACTCGATCGCGAACTGGTTCCAGACATGGTCGCACGCGGAACCGGTGTGGTAGTGC
ATGTCACGTCCATCCAAAGAGTGCTACCTCTCCCGGAAGCGACCACGGCATATGCCGCAGCCAAGGCGGCACTTTCGACT
TACAGCAAGGCCATGTCCAAGGAGGTGTCGCCCAAGGGCGTCCGCGTCGTGCGAGTTTCTCCGGGGTGGATCGAAACGGA
AGCGTCTGTCCACTTGGCCCAGCGCTTGGCGGAAAAGGCGGGCACGGACCTTGAGGGCGGCAAGAAAATTATCATGGACA
GCTTGGGTGGCATACCTCTCGGGCGCCCGGCCAAGCCGACGGAAGTCGCAGACCTGATTGCCTTCCTGGCATCGGATCGC
GCTGCATCGATCACTGGTACCGAATACACCATCGATGGAGGAACTGTGCCAACAGCCTAG

Upstream 100 bases:

>100_bases
TCCGAGCCAAAGTTAGCGGCCAGTTTCCCGGCAGTCCGGTGACGCTCTCATATGCCTTCACCATCGAGAACGGCAAGATC
GCTAGGCTGGAGATCCGGTG

Downstream 100 bases:

>100_bases
GGACCGACGCCCTCACGGATCAGGCGGGTGCGTCCCAGCCGCCGATCTGTGAATAGATGGTGTCGCGAAGATGCCGGACA
TCGCGATTCAAGGATGCCAA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTDFLNLRGKRALITAGTKGAGAATVSLFRELGAQVLTTARARPENLPEELFVEADLTTEEGCAAVVDVARQRLGNIDII
VHMLGGSSAAGGGFRALTDAEWQKEMSLNLFPAVRLDRELVPDMVARGTGVVVHVTSIQRVLPLPEATTAYAAAKAALST
YSKAMSKEVSPKGVRVVRVSPGWIETEASVHLAQRLAEKAGTDLEGGKKIIMDSLGGIPLGRPAKPTEVADLIAFLASDR
AASITGTEYTIDGGTVPTA

Sequences:

>Translated_259_residues
MTDFLNLRGKRALITAGTKGAGAATVSLFRELGAQVLTTARARPENLPEELFVEADLTTEEGCAAVVDVARQRLGNIDII
VHMLGGSSAAGGGFRALTDAEWQKEMSLNLFPAVRLDRELVPDMVARGTGVVVHVTSIQRVLPLPEATTAYAAAKAALST
YSKAMSKEVSPKGVRVVRVSPGWIETEASVHLAQRLAEKAGTDLEGGKKIIMDSLGGIPLGRPAKPTEVADLIAFLASDR
AASITGTEYTIDGGTVPTA
>Mature_258_residues
TDFLNLRGKRALITAGTKGAGAATVSLFRELGAQVLTTARARPENLPEELFVEADLTTEEGCAAVVDVARQRLGNIDIIV
HMLGGSSAAGGGFRALTDAEWQKEMSLNLFPAVRLDRELVPDMVARGTGVVVHVTSIQRVLPLPEATTAYAAAKAALSTY
SKAMSKEVSPKGVRVVRVSPGWIETEASVHLAQRLAEKAGTDLEGGKKIIMDSLGGIPLGRPAKPTEVADLIAFLASDRA
ASITGTEYTIDGGTVPTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=264, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI59889578, Length=242, Percent_Identity=29.3388429752066, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=24.3445692883895, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI15277342, Length=160, Percent_Identity=28.125, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=30.2325581395349, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=28.7937743190661, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=26.7175572519084, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082160, Length=266, Percent_Identity=24.0601503759398, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786812, Length=269, Percent_Identity=28.996282527881, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=29.0196078431373, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787905, Length=270, Percent_Identity=28.1481481481481, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=27.8225806451613, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=266, Percent_Identity=24.4360902255639, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367175, Length=261, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789208, Length=265, Percent_Identity=24.1509433962264, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=268, Percent_Identity=31.7164179104478, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=282, Percent_Identity=31.5602836879433, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=274, Percent_Identity=31.7518248175182, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=30.1470588235294, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=29.1512915129151, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=30.3703703703704, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=263, Percent_Identity=29.277566539924, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=30.4832713754647, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=235, Percent_Identity=28.936170212766, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.8270676691729, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=275, Percent_Identity=32, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.9701492537313, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=29.811320754717, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=26.6917293233083, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=28.6259541984733, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=280, Percent_Identity=30, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=29.368029739777, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=28.4644194756554, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=29.3233082706767, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=28.7313432835821, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=28.1481481481481, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=25.4826254826255, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=29.5019157088123, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=29.8449612403101, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=30.7984790874525, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571526, Length=261, Percent_Identity=29.1187739463602, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=26.6409266409266, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=28, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644337, Length=125, Percent_Identity=33.6, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 27177; Mature: 27046

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFLNLRGKRALITAGTKGAGAATVSLFRELGAQVLTTARARPENLPEELFVEADLTTE
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECCCCC
EGCAAVVDVARQRLGNIDIIVHMLGGSSAAGGGFRALTDAEWQKEMSLNLFPAVRLDREL
CCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCHHH
VPDMVARGTGVVVHVTSIQRVLPLPEATTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVS
HHHHHHCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
PGWIETEASVHLAQRLAEKAGTDLEGGKKIIMDSLGGIPLGRPAKPTEVADLIAFLASDR
CCCEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
AASITGTEYTIDGGTVPTA
CCEECCCEEEECCCCCCCC
>Mature Secondary Structure 
TDFLNLRGKRALITAGTKGAGAATVSLFRELGAQVLTTARARPENLPEELFVEADLTTE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECCCCC
EGCAAVVDVARQRLGNIDIIVHMLGGSSAAGGGFRALTDAEWQKEMSLNLFPAVRLDREL
CCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCHHH
VPDMVARGTGVVVHVTSIQRVLPLPEATTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVS
HHHHHHCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
PGWIETEASVHLAQRLAEKAGTDLEGGKKIIMDSLGGIPLGRPAKPTEVADLIAFLASDR
CCCEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
AASITGTEYTIDGGTVPTA
CCEECCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]