BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

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The map label for this gene is dppD [H]

Identifier: 150395558

GI number: 150395558

Start: 362593

End: 363447

Strand: Direct

Name: dppD [H]

Synonym: Smed_0332

Alternate gene names: 150395558

Gene position: 362593-363447 (Clockwise)

Preceding gene: 150395557

Following gene: 150395559

Centisome position: 9.59

GC content: 61.05

Gene sequence:

>855_bases
ATGGCGCTTCTCGAAATCGAAAATCTCGTCGTCGAATTCCAGACGGCGTCCGGGCCCTTCCGGGCGGTAGACGGCGTGTC
GCTCAAGGTGCATGAGAGCGAGGTCCTGGCAATCGTCGGAGAATCGGGCTCCGGTAAATCCGTGTCCATGCTTGCCGCCA
TGGGGCTTCTGCCCTGGACCGCCAGGGTGACGGCGGACAAGCTCGCCTTCAAAGGGCGGGATCTGCTGAAAATGCCCGCT
TCCGACCGTCGCAAGATCATCGGCAAGGACATTGCGATGATCTTTCAGGAGCCTATCGCCAGCCTCAATCCATGCTTCAC
CGTGGGTTTCCAGATCGAGGAAGTGCTGCGGATACATATGGGCCTCGACCGGGCAGCGCGGCGCAAACGCGCGATCGAGC
TGTTCGAGTCGGTCGGCATTCCCGACCCGGCCGAGCGCCTCGGGCACTTCCCGCACCAGATGTCGGGCGGACAGTGCCAG
CGCGTGATGATCGCCATCGCGCTTGCCTGTAATCCGAAGCTGCTCATCGCAGATGAGCCGACGACCGCATTGGACGTGAC
GATCCAGAAGCAGATCCTCGACCTCCTGATGAAGCTGCAGCAGGAATACCGCATGGGCCTGATCATGATCACCCATAACA
TGGGCGTCGTTGCGGAGACCGCGGACCGCGTCATCGTGCAGTATAAGGGCCGCAAGATCGAGGAGGCGGACGTTCTGTCG
CTGTTCGAATCGCCGAAGAGCAATTACACCCGCGCCCTTCTCTCGGCCCTGCCGGAGAATGCGACGGGGGACCGGTTGCC
GACGATTTCCGAACTTTTCAATGAGCAGCAGATGCTCGATGGAGCCGCTCGATGA

Upstream 100 bases:

>100_bases
ACGCTTCCGGGCCTCGCCATCCTGGTGACCGTCCTGGCCATCAATCTGATGGGCGATGGCCTGCGCGACGCTCTCGATCC
GAAGCTGAAGAGGTCCTGAC

Downstream 100 bases:

>100_bases
CCCATGTTCTCGAAGCCCGCAATCTGGTGCGCGACTATCACATTCCCGGAAACCTCTTCCGCCAGGCGCGCAGCGTGCAC
GCGCTGAAGGGCGTGAGCTT

Product: ABC transporter-like protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MALLEIENLVVEFQTASGPFRAVDGVSLKVHESEVLAIVGESGSGKSVSMLAAMGLLPWTARVTADKLAFKGRDLLKMPA
SDRRKIIGKDIAMIFQEPIASLNPCFTVGFQIEEVLRIHMGLDRAARRKRAIELFESVGIPDPAERLGHFPHQMSGGQCQ
RVMIAIALACNPKLLIADEPTTALDVTIQKQILDLLMKLQQEYRMGLIMITHNMGVVAETADRVIVQYKGRKIEEADVLS
LFESPKSNYTRALLSALPENATGDRLPTISELFNEQQMLDGAAR

Sequences:

>Translated_284_residues
MALLEIENLVVEFQTASGPFRAVDGVSLKVHESEVLAIVGESGSGKSVSMLAAMGLLPWTARVTADKLAFKGRDLLKMPA
SDRRKIIGKDIAMIFQEPIASLNPCFTVGFQIEEVLRIHMGLDRAARRKRAIELFESVGIPDPAERLGHFPHQMSGGQCQ
RVMIAIALACNPKLLIADEPTTALDVTIQKQILDLLMKLQQEYRMGLIMITHNMGVVAETADRVIVQYKGRKIEEADVLS
LFESPKSNYTRALLSALPENATGDRLPTISELFNEQQMLDGAAR
>Mature_283_residues
ALLEIENLVVEFQTASGPFRAVDGVSLKVHESEVLAIVGESGSGKSVSMLAAMGLLPWTARVTADKLAFKGRDLLKMPAS
DRRKIIGKDIAMIFQEPIASLNPCFTVGFQIEEVLRIHMGLDRAARRKRAIELFESVGIPDPAERLGHFPHQMSGGQCQR
VMIAIALACNPKLLIADEPTTALDVTIQKQILDLLMKLQQEYRMGLIMITHNMGVVAETADRVIVQYKGRKIEEADVLSL
FESPKSNYTRALLSALPENATGDRLPTISELFNEQQMLDGAAR

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=238, Percent_Identity=27.3109243697479, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI105990541, Length=236, Percent_Identity=26.271186440678, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI9961252, Length=229, Percent_Identity=31.0043668122271, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4505771, Length=229, Percent_Identity=31.0043668122271, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961250, Length=229, Percent_Identity=31.0043668122271, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI116734710, Length=238, Percent_Identity=24.7899159663866, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=30.5164319248826, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1789963, Length=261, Percent_Identity=57.088122605364, Blast_Score=318, Evalue=3e-88,
Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=49.8098859315589, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI48994883, Length=269, Percent_Identity=43.8661710037175, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1788506, Length=267, Percent_Identity=47.1910112359551, Blast_Score=224, Evalue=4e-60,
Organism=Escherichia coli, GI1787548, Length=277, Percent_Identity=41.1552346570397, Blast_Score=210, Evalue=8e-56,
Organism=Escherichia coli, GI1787759, Length=284, Percent_Identity=39.4366197183099, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1787500, Length=267, Percent_Identity=43.0711610486891, Blast_Score=197, Evalue=7e-52,
Organism=Escherichia coli, GI1789962, Length=270, Percent_Identity=38.8888888888889, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1789890, Length=253, Percent_Identity=39.9209486166008, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=37.6569037656904, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=33.0769230769231, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787547, Length=263, Percent_Identity=32.319391634981, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789891, Length=241, Percent_Identity=34.4398340248963, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=33.59375, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=34.6456692913386, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=32.4, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789672, Length=262, Percent_Identity=31.2977099236641, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=30, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787712, Length=274, Percent_Identity=30.6569343065693, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786872, Length=247, Percent_Identity=32.7935222672065, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=33.8983050847458, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=32.6359832635983, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=32.0675105485232, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87081834, Length=239, Percent_Identity=32.2175732217573, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787105, Length=223, Percent_Identity=33.1838565022422, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=28.6274509803922, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081709, Length=255, Percent_Identity=26.6666666666667, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788644, Length=244, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788450, Length=278, Percent_Identity=24.4604316546763, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=28.0172413793103, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790162, Length=256, Percent_Identity=25.78125, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786563, Length=216, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786253, Length=208, Percent_Identity=31.7307692307692, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=29.3023255813954, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=28.125, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789991, Length=281, Percent_Identity=29.8932384341637, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082267, Length=245, Percent_Identity=26.9387755102041, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790467, Length=256, Percent_Identity=24.609375, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=32.0388349514563, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=29.2372881355932, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787972, Length=226, Percent_Identity=30.5309734513274, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87082268, Length=260, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790190, Length=233, Percent_Identity=29.6137339055794, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786319, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=26.4957264957265, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788472, Length=214, Percent_Identity=26.1682242990654, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786654, Length=237, Percent_Identity=26.1603375527426, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=32.3943661971831, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI115534520, Length=233, Percent_Identity=29.1845493562232, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=267, Percent_Identity=25.4681647940075, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=227, Percent_Identity=32.15859030837, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=221, Percent_Identity=28.0542986425339, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=232, Percent_Identity=29.7413793103448, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=232, Percent_Identity=29.7413793103448, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=232, Percent_Identity=29.7413793103448, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=226, Percent_Identity=29.646017699115, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=222, Percent_Identity=31.981981981982, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=228, Percent_Identity=28.5087719298246, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=213, Percent_Identity=28.169014084507, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=218, Percent_Identity=28.4403669724771, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=246, Percent_Identity=28.4552845528455, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=224, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=219, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI85726357, Length=276, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17136662, Length=237, Percent_Identity=28.6919831223629, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24653245, Length=241, Percent_Identity=30.2904564315353, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI281363262, Length=242, Percent_Identity=30.5785123966942, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31268; Mature: 31137

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLEIENLVVEFQTASGPFRAVDGVSLKVHESEVLAIVGESGSGKSVSMLAAMGLLPWT
CCEEEEEHEEEEEECCCCCCEEECCCEEEEECCEEEEEEECCCCCCHHHHHHHHHCCCCH
ARVTADKLAFKGRDLLKMPASDRRKIIGKDIAMIFQEPIASLNPCFTVGFQIEEVLRIHM
HHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHH
GLDRAARRKRAIELFESVGIPDPAERLGHFPHQMSGGQCQRVMIAIALACNPKLLIADEP
CHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHEECCCEEEEECCC
TTALDVTIQKQILDLLMKLQQEYRMGLIMITHNMGVVAETADRVIVQYKGRKIEEADVLS
CCEEHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEHHHHHEEEEECCCCCCHHHHHH
LFESPKSNYTRALLSALPENATGDRLPTISELFNEQQMLDGAAR
HHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALLEIENLVVEFQTASGPFRAVDGVSLKVHESEVLAIVGESGSGKSVSMLAAMGLLPWT
CEEEEEHEEEEEECCCCCCEEECCCEEEEECCEEEEEEECCCCCCHHHHHHHHHCCCCH
ARVTADKLAFKGRDLLKMPASDRRKIIGKDIAMIFQEPIASLNPCFTVGFQIEEVLRIHM
HHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHH
GLDRAARRKRAIELFESVGIPDPAERLGHFPHQMSGGQCQRVMIAIALACNPKLLIADEP
CHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHEECCCEEEEECCC
TTALDVTIQKQILDLLMKLQQEYRMGLIMITHNMGVVAETADRVIVQYKGRKIEEADVLS
CCEEHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEHHHHHEEEEECCCCCCHHHHHH
LFESPKSNYTRALLSALPENATGDRLPTISELFNEQQMLDGAAR
HHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]