Click here to switch to the map view.

The map label for this gene is flgH [H]

Identifier: 150395489

GI number: 150395489

Start: 282265

End: 282975

Strand: Direct

Name: flgH [H]

Synonym: Smed_0262

Alternate gene names: 150395489

Gene position: 282265-282975 (Clockwise)

Preceding gene: 150395488

Following gene: 150395490

Centisome position: 7.46

GC content: 63.15

Gene sequence:

>711_bases
ATGAGAATGCGAATCACGGCCATATTGGCCGCAGGGCTCCTGGCGGGGTGCCAGAACCAGGCCTTCAACGAGATCGGGCG
AGCGCCGGCCATGAGCCCGATCGGCAGCGGACTGCAATATACGCAGACGCCTCAGCTCGCCATGTATCCAAAGCAGCCGC
GCCACGTCACGAACGGATATTCGCTCTGGAACGACCAGCAGGCGGCCCTCTTCAAGGATGCACGCGCGATCAATATCGGC
GACATATTGACCGTGGACATCCGCATCGATGACAAGGCTTCCTTCGAAAACGAGACGGACCGCAGCCGCAAGAACTCGAG
CGGCTTCAATCTGGGCGCCAGCGGGGAGTCGCAGACGAGCGATTTTGCCTGGTCGGGCGATCTCGAATACGGCTCCAACA
CAAAGACGGAAGGCGACGGCAAGACAGAGCGCTCGGAGAAGCTCAGGCTGCTCGTCGCGGCGGTCGTCACCGGGGTCCTC
GAAAACGGCAACCTCCTCATCAGCGGCTCGCAGGAAGTGCGCGTCAATCACGAGCTGCGTATCCTCAACGTGGCAGGCAT
CGTCCGGCCGCGCGACGTGGATGCCGACAACGTCATCTCCTACGACCGCATCGCCGAGGCACGCATCTCCTATGGCGGCC
GCGGCCGCCTGACGGAAGTCCAGCAGCCGCCATGGGGACAGCAGCTCGTCGACCTCGTCTCGCCCCTCTGA

Upstream 100 bases:

>100_bases
AGTCGTCGCTGATCCTGAGCGAGATGAGCGACGAGAAGGCGGCGATGCTCACCAATATCATTTCGAGCGCGAGCGATCCC
GATACCTCCAAGGAGCCATC

Downstream 100 bases:

>100_bases
TCGGCCGGAACGCACAATGGAAGAAATCGAGAGCAAAGAAACGAAATCGCCTTCGCGGGTGATGACCATCGCGGCGGTGG
CGGCGCTGACGCTCGTCGCC

Product: flagellar basal body L-ring protein

Products: NA

Alternate protein names: Basal body L-ring protein [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRMRITAILAAGLLAGCQNQAFNEIGRAPAMSPIGSGLQYTQTPQLAMYPKQPRHVTNGYSLWNDQQAALFKDARAINIG
DILTVDIRIDDKASFENETDRSRKNSSGFNLGASGESQTSDFAWSGDLEYGSNTKTEGDGKTERSEKLRLLVAAVVTGVL
ENGNLLISGSQEVRVNHELRILNVAGIVRPRDVDADNVISYDRIAEARISYGGRGRLTEVQQPPWGQQLVDLVSPL

Sequences:

>Translated_236_residues
MRMRITAILAAGLLAGCQNQAFNEIGRAPAMSPIGSGLQYTQTPQLAMYPKQPRHVTNGYSLWNDQQAALFKDARAINIG
DILTVDIRIDDKASFENETDRSRKNSSGFNLGASGESQTSDFAWSGDLEYGSNTKTEGDGKTERSEKLRLLVAAVVTGVL
ENGNLLISGSQEVRVNHELRILNVAGIVRPRDVDADNVISYDRIAEARISYGGRGRLTEVQQPPWGQQLVDLVSPL
>Mature_236_residues
MRMRITAILAAGLLAGCQNQAFNEIGRAPAMSPIGSGLQYTQTPQLAMYPKQPRHVTNGYSLWNDQQAALFKDARAINIG
DILTVDIRIDDKASFENETDRSRKNSSGFNLGASGESQTSDFAWSGDLEYGSNTKTEGDGKTERSEKLRLLVAAVVTGVL
ENGNLLISGSQEVRVNHELRILNVAGIVRPRDVDADNVISYDRIAEARISYGGRGRLTEVQQPPWGQQLVDLVSPL

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation [H]

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family [H]

Homologues:

Organism=Escherichia coli, GI1787319, Length=209, Percent_Identity=26.7942583732057, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000527 [H]

Pfam domain/function: PF02107 FlgH [H]

EC number: NA

Molecular weight: Translated: 25775; Mature: 25775

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMRITAILAAGLLAGCQNQAFNEIGRAPAMSPIGSGLQYTQTPQLAMYPKQPRHVTNGY
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCC
SLWNDQQAALFKDARAINIGDILTVDIRIDDKASFENETDRSRKNSSGFNLGASGESQTS
CCCCCCHHHHHHCCCEEECCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
DFAWSGDLEYGSNTKTEGDGKTERSEKLRLLVAAVVTGVLENGNLLISGSQEVRVNHELR
CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCEEE
ILNVAGIVRPRDVDADNVISYDRIAEARISYGGRGRLTEVQQPPWGQQLVDLVSPL
EEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRMRITAILAAGLLAGCQNQAFNEIGRAPAMSPIGSGLQYTQTPQLAMYPKQPRHVTNGY
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCC
SLWNDQQAALFKDARAINIGDILTVDIRIDDKASFENETDRSRKNSSGFNLGASGESQTS
CCCCCCHHHHHHCCCEEECCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
DFAWSGDLEYGSNTKTEGDGKTERSEKLRLLVAAVVTGVLENGNLLISGSQEVRVNHELR
CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCEEE
ILNVAGIVRPRDVDADNVISYDRIAEARISYGGRGRLTEVQQPPWGQQLVDLVSPL
EEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]