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The map label for this gene is ydjZ [C]

Identifier: 150395311

GI number: 150395311

Start: 91523

End: 92323

Strand: Direct

Name: ydjZ [C]

Synonym: Smed_0083

Alternate gene names: 150395311

Gene position: 91523-92323 (Clockwise)

Preceding gene: 150395310

Following gene: 150395312

Centisome position: 2.42

GC content: 64.54

Gene sequence:

>801_bases
ATGAGTCATGGTGTCAGCAACGGGACGGAAGAACGTCCGGCTCCGAAATCCCGGAAGAGCCGGGGGGCTCCCACACCCGG
TCCGCGCCGTTCCCCCGTGCGGTTCGTGCCCCTTGCCATCCTCCTGGCCGGTGGCGTCCTGGCATATGCACTTGGTCTGC
AGGACTATGTCTCGCTTTCCGCGCTCGTCGACCAGCGCGATGCACTTGCCGCCCAGGTCGCCGCCCATCCGATCCAGTCG
GCTCTCGTCTTCTTCGCGGTCTATGCCGCGGTCGTCGTCTTCTCCATTCCGGCGGCATCAGTGCTGACGATCTTCGCAGG
CTTCCTCTTCGGCTGGCTTGCCGGTGCGGCCGTTGCGGTTCTTTCGGCCACGCTCGGTGCGTGCCTGTTGTTCCTCGCCG
CGCGCGGCGCCTTCAGGGATGTCCTCAGGCGCCGCGCAGGCGGTTTCCTGGACCGGTTCGCCGTAGGATTTCGGGATAAC
GCCTTCCTCTATCTCCTGGTTCTGCGGCTGGCACCGGTCTTCCCGTTTTTCGTGATCAACATCGCGCCCGCCTTTTTCGA
TGTGAAACTGCGCACCTTCGCGACCGCTACGCTGATCGGCATCGTGCCCGGCACTCTCGCCTATGCCTGGCTCGGCTGCG
GCCTCGGCGACGTGCTCGCCATGGCGGCTGCAAGCGGGCGTTCGCTCGCCCTTTCCGATTTCGTCACCAGGGACGTATCG
CTGGCGCTCATCGCCCTTGCGCTGATTGCTACATTGCCCCTGGCATTCAGGCTTATACAGTCGCGCCGCAAAGAAGCGTG
A

Upstream 100 bases:

>100_bases
GGCGTGGTCACGCCGACTTTTGCGGACGCGACCATTCTTTATTGGTTCCGAATATGAAATCCTTCTAACCCAAGGGGTCA
TCTCACCGGAAGCGAATCGC

Downstream 100 bases:

>100_bases
CGGAGATACGGATAGGGTAGAGGGCGTGGTGAAGCAATTGACACCGGACATCTGCGTAATTGGCGGCGGTGCAGCCGGGC
TCACGGTAGCCGCCGGAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSHGVSNGTEERPAPKSRKSRGAPTPGPRRSPVRFVPLAILLAGGVLAYALGLQDYVSLSALVDQRDALAAQVAAHPIQS
ALVFFAVYAAVVVFSIPAASVLTIFAGFLFGWLAGAAVAVLSATLGACLLFLAARGAFRDVLRRRAGGFLDRFAVGFRDN
AFLYLLVLRLAPVFPFFVINIAPAFFDVKLRTFATATLIGIVPGTLAYAWLGCGLGDVLAMAAASGRSLALSDFVTRDVS
LALIALALIATLPLAFRLIQSRRKEA

Sequences:

>Translated_266_residues
MSHGVSNGTEERPAPKSRKSRGAPTPGPRRSPVRFVPLAILLAGGVLAYALGLQDYVSLSALVDQRDALAAQVAAHPIQS
ALVFFAVYAAVVVFSIPAASVLTIFAGFLFGWLAGAAVAVLSATLGACLLFLAARGAFRDVLRRRAGGFLDRFAVGFRDN
AFLYLLVLRLAPVFPFFVINIAPAFFDVKLRTFATATLIGIVPGTLAYAWLGCGLGDVLAMAAASGRSLALSDFVTRDVS
LALIALALIATLPLAFRLIQSRRKEA
>Mature_265_residues
SHGVSNGTEERPAPKSRKSRGAPTPGPRRSPVRFVPLAILLAGGVLAYALGLQDYVSLSALVDQRDALAAQVAAHPIQSA
LVFFAVYAAVVVFSIPAASVLTIFAGFLFGWLAGAAVAVLSATLGACLLFLAARGAFRDVLRRRAGGFLDRFAVGFRDNA
FLYLLVLRLAPVFPFFVINIAPAFFDVKLRTFATATLIGIVPGTLAYAWLGCGLGDVLAMAAASGRSLALSDFVTRDVSL
ALIALALIATLPLAFRLIQSRRKEA

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28048; Mature: 27917

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SHGVSNGTEERPAPKSRKSRGAPTPGPRRSPVRFVPLAILLAGGVLAYALGLQDYVSLS
CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVDQRDALAAQVAAHPIQSALVFFAVYAAVVVFSIPAASVLTIFAGFLFGWLAGAAVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LSATLGACLLFLAARGAFRDVLRRRAGGFLDRFAVGFRDNAFLYLLVLRLAPVFPFFVIN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
IAPAFFDVKLRTFATATLIGIVPGTLAYAWLGCGLGDVLAMAAASGRSLALSDFVTRDVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHH
LALIALALIATLPLAFRLIQSRRKEA
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]