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The map label for this gene is pell

Identifier: 15004760

GI number: 15004760

Start: 56818

End: 57954

Strand: Direct

Name: pell

Synonym: CA_P0056

Alternate gene names: 15004760

Gene position: 56818-57954 (Clockwise)

Preceding gene: 15004759

Following gene: 15004767

Centisome position: 29.59

GC content: 35.27

Gene sequence:

>1137_bases
ATGAAAAAAATAGTATGCTTAGTCGCATCAGCGGCACTTTCGCTTTCATTATTTTCACTACCTCAGCTAGCAAGTAGTGT
TAATGCAGCTAGTGCACCTGTAACTATACAGGTAGCTAGTACAGGAACTAGTGATGATTCAGATGTTTTAAAGTCAGCTA
TAGCTAAGGCTAATCCTGGAGACACAATTTTACTTACTAGCTCAACTTACAAATTGAAATCACCTATTCTTTTAAATAAG
GATGGTGGTACTGGAAATACCATAAAATTAAAAGGGGCAGGTTCAAACAGAGTTAGGCTTGATTTTTCAGGTGAAGCAGA
TGGAGATAGTTCTTACGGAATTAACATAAAAAATGCTTATTGGGAATTACAGAACTTAGATGTCTACAGTGCTGGTGATA
ACGGCATAATAATGAAAGGAGCTGCGTCTAATCATAACATTATTACAAATTGTGAAACTGAGAATAATGATGATGCAGGT
CTTCAGATTACAGGAGGAGCACATGATAATACAGTTCAAGGCTGTGATTCCTTTAATAATTATGACATAAAAACAAAGGG
ATCAAATGCAGATGGTTTTGCATGTAAGCTTGGTGCTGGAGCAGGAAATAAGTTTATAAGCTGTAATTCTTATGGTAATG
CAGACGATGGTTGGGATTTACTTGGAACTGACGAAGCAGTTACAATAACTAATTGTACAGCTACTAAAAATGGATATTAT
CATGGAGATCCAACAAATGCCCTTAATAATTCAGGAATGAATGGTGACGGAATAAAGCTTGGAGGTAATCAAAAACCACC
AAAGGGAACACATAGATCATTAGGTTCACATGTTGTAACTGGCTGTAAATCTTATGACAATAAGGGTGCTGGATTCTCAC
AAAACAACAGTGCAGGAAATTTATATCTTAAAAACTGTGATGCTGACAGAAATGGAGCAAACAATATACTAAATGCTAAT
CAAAAAACTACTAAGTCTAATTTTAATTTCCCGTACAATCCTAATAACGGAAACGTATTTACTTTTGAAAATTGTACAAC
AACAGGGAAATGTACTATATACTCAGAGGCAAAGGTTATAGGTGGAACTGTATATGCAACAGCTCCTAATAATCCACTTC
CAAATATAAATGACTAA

Upstream 100 bases:

>100_bases
ATGTTAACGTTGATAGGTATAATGTGTAATATAAGGCTTAATTATTGATAACAGAAATGTTAACGTTAACATAAAAATCT
TAAGAAAAGAGGTTTTATTT

Downstream 100 bases:

>100_bases
TTAAAATAAAATATTATTAACTTATCTAATAAAATGGATGCCAACAAAACTGGCATCCATTTTCAATACTTAATATTTAA
ATCAAAGATTAAACTAGAGG

Product: pectate lyase

Products: NA

Alternate protein names: Pectate transeliminase [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKKIVCLVASAALSLSLFSLPQLASSVNAASAPVTIQVASTGTSDDSDVLKSAIAKANPGDTILLTSSTYKLKSPILLNK
DGGTGNTIKLKGAGSNRVRLDFSGEADGDSSYGINIKNAYWELQNLDVYSAGDNGIIMKGAASNHNIITNCETENNDDAG
LQITGGAHDNTVQGCDSFNNYDIKTKGSNADGFACKLGAGAGNKFISCNSYGNADDGWDLLGTDEAVTITNCTATKNGYY
HGDPTNALNNSGMNGDGIKLGGNQKPPKGTHRSLGSHVVTGCKSYDNKGAGFSQNNSAGNLYLKNCDADRNGANNILNAN
QKTTKSNFNFPYNPNNGNVFTFENCTTTGKCTIYSEAKVIGGTVYATAPNNPLPNIND

Sequences:

>Translated_378_residues
MKKIVCLVASAALSLSLFSLPQLASSVNAASAPVTIQVASTGTSDDSDVLKSAIAKANPGDTILLTSSTYKLKSPILLNK
DGGTGNTIKLKGAGSNRVRLDFSGEADGDSSYGINIKNAYWELQNLDVYSAGDNGIIMKGAASNHNIITNCETENNDDAG
LQITGGAHDNTVQGCDSFNNYDIKTKGSNADGFACKLGAGAGNKFISCNSYGNADDGWDLLGTDEAVTITNCTATKNGYY
HGDPTNALNNSGMNGDGIKLGGNQKPPKGTHRSLGSHVVTGCKSYDNKGAGFSQNNSAGNLYLKNCDADRNGANNILNAN
QKTTKSNFNFPYNPNNGNVFTFENCTTTGKCTIYSEAKVIGGTVYATAPNNPLPNIND
>Mature_378_residues
MKKIVCLVASAALSLSLFSLPQLASSVNAASAPVTIQVASTGTSDDSDVLKSAIAKANPGDTILLTSSTYKLKSPILLNK
DGGTGNTIKLKGAGSNRVRLDFSGEADGDSSYGINIKNAYWELQNLDVYSAGDNGIIMKGAASNHNIITNCETENNDDAG
LQITGGAHDNTVQGCDSFNNYDIKTKGSNADGFACKLGAGAGNKFISCNSYGNADDGWDLLGTDEAVTITNCTATKNGYY
HGDPTNALNNSGMNGDGIKLGGNQKPPKGTHRSLGSHVVTGCKSYDNKGAGFSQNNSAGNLYLKNCDADRNGANNILNAN
QKTTKSNFNFPYNPNNGNVFTFENCTTTGKCTIYSEAKVIGGTVYATAPNNPLPNIND

Specific function: Presents an endo-cleaving activity on polygalacturonate or partially methylated pectin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: NA

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 39409; Mature: 39409

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVCLVASAALSLSLFSLPQLASSVNAASAPVTIQVASTGTSDDSDVLKSAIAKANPG
CCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
DTILLTSSTYKLKSPILLNKDGGTGNTIKLKGAGSNRVRLDFSGEADGDSSYGINIKNAY
CEEEEECCCEEECCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEHHE
WELQNLDVYSAGDNGIIMKGAASNHNIITNCETENNDDAGLQITGGAHDNTVQGCDSFNN
EEEECEEEEECCCCCEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHCCCCCCC
YDIKTKGSNADGFACKLGAGAGNKFISCNSYGNADDGWDLLGTDEAVTITNCTATKNGYY
CEEEECCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCEE
HGDPTNALNNSGMNGDGIKLGGNQKPPKGTHRSLGSHVVTGCKSYDNKGAGFSQNNSAGN
CCCCCCHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
LYLKNCDADRNGANNILNANQKTTKSNFNFPYNPNNGNVFTFENCTTTGKCTIYSEAKVI
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCEEE
GGTVYATAPNNPLPNIND
CEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKKIVCLVASAALSLSLFSLPQLASSVNAASAPVTIQVASTGTSDDSDVLKSAIAKANPG
CCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
DTILLTSSTYKLKSPILLNKDGGTGNTIKLKGAGSNRVRLDFSGEADGDSSYGINIKNAY
CEEEEECCCEEECCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEHHE
WELQNLDVYSAGDNGIIMKGAASNHNIITNCETENNDDAGLQITGGAHDNTVQGCDSFNN
EEEECEEEEECCCCCEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHCCCCCCC
YDIKTKGSNADGFACKLGAGAGNKFISCNSYGNADDGWDLLGTDEAVTITNCTATKNGYY
CEEEECCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCEE
HGDPTNALNNSGMNGDGIKLGGNQKPPKGTHRSLGSHVVTGCKSYDNKGAGFSQNNSAGN
CCCCCCHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
LYLKNCDADRNGANNILNANQKTTKSNFNFPYNPNNGNVFTFENCTTTGKCTIYSEAKVI
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCEEE
GGTVYATAPNNPLPNIND
CEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8577252 [H]