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The map label for this gene is rfaS [C]

Identifier: 150010397

GI number: 150010397

Start: 4670335

End: 4671345

Strand: Direct

Name: rfaS [C]

Synonym: BDI_3834

Alternate gene names: 150010397

Gene position: 4670335-4671345 (Clockwise)

Preceding gene: 150010396

Following gene: 150010398

Centisome position: 97.07

GC content: 30.56

Gene sequence:

>1011_bases
ATGGAAAAATTATTAGGAAAAAAGGTATTGCTATTTTCTCCTTTTGGAACCTGTAAACATTATACAGATGGTTGTGTTAC
AGAGTTGGAAAGTAGAGGGGCGGAAGTACGTGTTTATGACGAACGTCCGTCACAAGCTTCTTTCACAAAAATATATATGT
ATTTGTTTAAAAAGGTAGTGCCACAGTATTTCTTCAATTACATTAGAAGAATTGTGACTATCAATAAGGATTTTAATCCT
GATATAATTTTTGTAATAAGGGGGCAGGGATTTGATGTGAAAGTACTTAAATATCTTCATAGGTGTTTTCCAAAATCTAC
TTTCATCTTTTTTCAGTGGGACCCTTTATGTGGAAAAAAAATACCAGAGATCCTTAAACAATATGACTATGTTTATTCTT
TCGACACTGATGATGTTATAAATAATCCTCAATTTAAATTTAGACCTCTATTTTTTTTAAAAGAATATCAGGATATAGCT
GTAAAAAAAGATTATAGCTTTGACGTATCTTTTGTGGGTACACTTTATAACAATAGATGGGGTGTTATAAAAAGACTTCA
AGAGTATTTTGTGATAAATCGGATCAAGTCATTCTTTTTTCTGTATATGGCAAGCTGGACACTTTATTTGTGGGATTTTA
TTCGTAGGGGAACTTTTGTTAGTTATAAAAGAATGCAATTTAAGCCGATGAGTTATTTAGAAAATGTGGAAATTGTTAGA
AAAAGTAAATGCATTCTTGATATTGTTTATTCTGAACAGAGCGGTCTATCTCCGAGGCCATATGAAGCTATGGCTGCTAA
CAGGAAGTATATTACTAATAATGCAGAAGTAATGAAATATGATTTCTATGATCCAGATAATATTTTAGTTGTTAATCTTG
AATGTATTAATATACCTAAGGAGTTCTTGTTCTCAGATTTTAAACCTGTTGATCCATCTATATTATACAGATATTCTCTT
CCTGGTTTTGTTGATGAAGTTTTTTCTAAAGTGGATAAAAGAGTAAAATAA

Upstream 100 bases:

>100_bases
GAGTGTATTAGTCGTGAATTTGATTATAACAAGGCTATGGAGAAATGAACCATAGATGGTTGAATGGATATAAAGAGGTT
GTTTTTTGATTTTTAAGTAA

Downstream 100 bases:

>100_bases
GTTCCATGAAATATTTAATTGTAGTTGCTCATCCCGACGATGAGGTTTTGGGAGCGGGAGCTTCTATCTCTAGATGGACC
CAAAATGGCGACATTGTAGA

Product: putative lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MEKLLGKKVLLFSPFGTCKHYTDGCVTELESRGAEVRVYDERPSQASFTKIYMYLFKKVVPQYFFNYIRRIVTINKDFNP
DIIFVIRGQGFDVKVLKYLHRCFPKSTFIFFQWDPLCGKKIPEILKQYDYVYSFDTDDVINNPQFKFRPLFFLKEYQDIA
VKKDYSFDVSFVGTLYNNRWGVIKRLQEYFVINRIKSFFFLYMASWTLYLWDFIRRGTFVSYKRMQFKPMSYLENVEIVR
KSKCILDIVYSEQSGLSPRPYEAMAANRKYITNNAEVMKYDFYDPDNILVVNLECINIPKEFLFSDFKPVDPSILYRYSL
PGFVDEVFSKVDKRVK

Sequences:

>Translated_336_residues
MEKLLGKKVLLFSPFGTCKHYTDGCVTELESRGAEVRVYDERPSQASFTKIYMYLFKKVVPQYFFNYIRRIVTINKDFNP
DIIFVIRGQGFDVKVLKYLHRCFPKSTFIFFQWDPLCGKKIPEILKQYDYVYSFDTDDVINNPQFKFRPLFFLKEYQDIA
VKKDYSFDVSFVGTLYNNRWGVIKRLQEYFVINRIKSFFFLYMASWTLYLWDFIRRGTFVSYKRMQFKPMSYLENVEIVR
KSKCILDIVYSEQSGLSPRPYEAMAANRKYITNNAEVMKYDFYDPDNILVVNLECINIPKEFLFSDFKPVDPSILYRYSL
PGFVDEVFSKVDKRVK
>Mature_336_residues
MEKLLGKKVLLFSPFGTCKHYTDGCVTELESRGAEVRVYDERPSQASFTKIYMYLFKKVVPQYFFNYIRRIVTINKDFNP
DIIFVIRGQGFDVKVLKYLHRCFPKSTFIFFQWDPLCGKKIPEILKQYDYVYSFDTDDVINNPQFKFRPLFFLKEYQDIA
VKKDYSFDVSFVGTLYNNRWGVIKRLQEYFVINRIKSFFFLYMASWTLYLWDFIRRGTFVSYKRMQFKPMSYLENVEIVR
KSKCILDIVYSEQSGLSPRPYEAMAANRKYITNNAEVMKYDFYDPDNILVVNLECINIPKEFLFSDFKPVDPSILYRYSL
PGFVDEVFSKVDKRVK

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40220; Mature: 40220

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLLGKKVLLFSPFGTCKHYTDGCVTELESRGAEVRVYDERPSQASFTKIYMYLFKKVV
CCCCCCCEEEEECCCCCHHHCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
PQYFFNYIRRIVTINKDFNPDIIFVIRGQGFDVKVLKYLHRCFPKSTFIFFQWDPLCGKK
HHHHHHHHHHHEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHH
IPEILKQYDYVYSFDTDDVINNPQFKFRPLFFLKEYQDIAVKKDYSFDVSFVGTLYNNRW
HHHHHHHCCCEEECCCCHHCCCCCCEEEHHHHHHHHHHHHEECCCCCCCEEEEEHHCCCH
GVIKRLQEYFVINRIKSFFFLYMASWTLYLWDFIRRGTFVSYKRMQFKPMSYLENVEIVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHHHHH
KSKCILDIVYSEQSGLSPRPYEAMAANRKYITNNAEVMKYDFYDPDNILVVNLECINIPK
HCCEEEEEEECCCCCCCCCCCHHHHCCCEEEECCCEEEEEECCCCCCEEEEEEEEECCCH
EFLFSDFKPVDPSILYRYSLPGFVDEVFSKVDKRVK
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKLLGKKVLLFSPFGTCKHYTDGCVTELESRGAEVRVYDERPSQASFTKIYMYLFKKVV
CCCCCCCEEEEECCCCCHHHCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
PQYFFNYIRRIVTINKDFNPDIIFVIRGQGFDVKVLKYLHRCFPKSTFIFFQWDPLCGKK
HHHHHHHHHHHEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHH
IPEILKQYDYVYSFDTDDVINNPQFKFRPLFFLKEYQDIAVKKDYSFDVSFVGTLYNNRW
HHHHHHHCCCEEECCCCHHCCCCCCEEEHHHHHHHHHHHHEECCCCCCCEEEEEHHCCCH
GVIKRLQEYFVINRIKSFFFLYMASWTLYLWDFIRRGTFVSYKRMQFKPMSYLENVEIVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHHHHH
KSKCILDIVYSEQSGLSPRPYEAMAANRKYITNNAEVMKYDFYDPDNILVVNLECINIPK
HCCEEEEEEECCCCCCCCCCCHHHHCCCEEEECCCEEEEEECCCCCCEEEEEEEEECCCH
EFLFSDFKPVDPSILYRYSLPGFVDEVFSKVDKRVK
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA