| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150010395
Identifier: 150010395
GI number: 150010395
Start: 4667846
End: 4669054
Strand: Direct
Name: 150010395
Synonym: BDI_3832
Alternate gene names: NA
Gene position: 4667846-4669054 (Clockwise)
Preceding gene: 150010394
Following gene: 150010396
Centisome position: 97.02
GC content: 43.67
Gene sequence:
>1209_bases ATGAAAATATTAGTGACCGGCTCTAATGGGTTTGTCGGCAGAAATCTTGTTTGCCAACTCAAAAATATACGGGATGGCAA GGCGAGGTATTATGGTGATCTGACCGTCTGCGCCGTATATGAGTATGATATTGATTCGACACAGGAAGAGTTGGAGCGAT ATTGTAGTGATTGTGACTTCGTATTCAATTTGGCAGGAGTGAACCGTCCGCAGAACCATGAAGAGTTTATGCAAGGAAAC TTTGGCTTCGCCTCTACACTGCTTGATACGCTGAAGAAGTATCAGAATAATTGTCCTGTTATGATCTCTAGTTCTATACA GGCTACGTTGGCGGGACGTTTCGGAACGTCTGAGTATGGTAAGAGCAAGAAGGCAGGAGAGGAACTTATGTTCCGATATG GTGAGGAGACGGGGGCGAAGGTGTTGGTGTATCGTTTTCCGAATCTGTTTGGAAAATGGTGTCGACCTAATTATAACAGT GCTGTCGCTACGTTCTGTAATAACATTGCCAACGATCTGCCTATCACTGTCAATGATCCGGCAGTAGAGTTGGAACTGCT TTATATAGATGACTTAGTGGAGGAGATGATAGCAGCCTTGAAGGGAGAGGAGCATCGTTGTGAGTTTGATGGTGTAGAAA CGGTGTTGAAAGAGGATGGTCGTTACTGTGCGGTTCCCATTACCCATAAGGTGACTTTGGGTGAGATCGTTCGATTGCTG GAAGGCTTTAAGAATCAGCCGAGCAGCTTGATAGTTCCGGAGATACCTTACAATAGTTTCGCTAAAAAGTTGTATAGTAC CTTCTTGAGCTATTTACCCAAGGAGAAGGTGGCTTTTCCCTTGAAGATGAACGTGGATCAACGTGGTAGTTTCACGGAAT TGCTTCGTTTGACGAATTGTGGACAGGTGAGTATTAATATCTCTAAGCCAGGTATAACCAAGGGGCAACATTGGCATCAC AGCAAATGGGAGTTTTTTATAGTAGTTTCCGGTCATGGCTTGATACAAGAGCGAAAGATCGGTACAGACGAGATGATTGA GTTTGATGTGAGTGGTGATAGAATTGAGGTGGTTCATATGCTTCCGGGTTATACGCATAATATTATTAATCTCTCCGATA CGGAGGATCTGGTAACGGTAATGTGGGCGAATGAGAGTTTTGATTTGAACCACCCGGATACCTATTTTGAACCTGTTAAA AAAGAATAG
Upstream 100 bases:
>100_bases CGTTTTATCCAAGAGGACCTTGGGCTGTTGCCTTGCGCTAAGGGCAGGGAGATCCGTTCGGAGTAATTTCCTTTCTTAAT TAATAAATTCTTTGTTTTTA
Downstream 100 bases:
>100_bases TGATGGCAACATTTAAGAATAATGGGAAATTAAAATTGCTGATCATCGTTGGTACTCGTCCGGAGATTATCCGGTTGGCA GCTGTTATTAATAAGTGCAG
Product: capsular polysaccharide biosynthesis protein Cps4K
Products: NA
Alternate protein names: Capsular Polysaccharide Biosynthesis K; Capsular Polysaccharide Synthesis; Capsular Polysaccharide Synthesis CapF; Capsular Polysaccharide Biosynthesis F; Nucleoside-Diphosphate-Sugar Epimerase; UDP-2-Acetamido-2 6-Dideoxy-Beta-L-Talose 4-Dehydrogenase; NAD Dependent Epimerase/Dehydratase; Nucleoside-Diphosphate-Sugar Epimerase WbjC; FnlB Protein Involved In UDP-L-FucpNAc Biosynthesis; Epimerase/Dehydratase; Capsular Polysaccharide Synthesis Cap5F; NAD Dependent Epimerase/Dehydratase Family
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MKILVTGSNGFVGRNLVCQLKNIRDGKARYYGDLTVCAVYEYDIDSTQEELERYCSDCDFVFNLAGVNRPQNHEEFMQGN FGFASTLLDTLKKYQNNCPVMISSSIQATLAGRFGTSEYGKSKKAGEELMFRYGEETGAKVLVYRFPNLFGKWCRPNYNS AVATFCNNIANDLPITVNDPAVELELLYIDDLVEEMIAALKGEEHRCEFDGVETVLKEDGRYCAVPITHKVTLGEIVRLL EGFKNQPSSLIVPEIPYNSFAKKLYSTFLSYLPKEKVAFPLKMNVDQRGSFTELLRLTNCGQVSINISKPGITKGQHWHH SKWEFFIVVSGHGLIQERKIGTDEMIEFDVSGDRIEVVHMLPGYTHNIINLSDTEDLVTVMWANESFDLNHPDTYFEPVK KE
Sequences:
>Translated_402_residues MKILVTGSNGFVGRNLVCQLKNIRDGKARYYGDLTVCAVYEYDIDSTQEELERYCSDCDFVFNLAGVNRPQNHEEFMQGN FGFASTLLDTLKKYQNNCPVMISSSIQATLAGRFGTSEYGKSKKAGEELMFRYGEETGAKVLVYRFPNLFGKWCRPNYNS AVATFCNNIANDLPITVNDPAVELELLYIDDLVEEMIAALKGEEHRCEFDGVETVLKEDGRYCAVPITHKVTLGEIVRLL EGFKNQPSSLIVPEIPYNSFAKKLYSTFLSYLPKEKVAFPLKMNVDQRGSFTELLRLTNCGQVSINISKPGITKGQHWHH SKWEFFIVVSGHGLIQERKIGTDEMIEFDVSGDRIEVVHMLPGYTHNIINLSDTEDLVTVMWANESFDLNHPDTYFEPVK KE >Mature_402_residues MKILVTGSNGFVGRNLVCQLKNIRDGKARYYGDLTVCAVYEYDIDSTQEELERYCSDCDFVFNLAGVNRPQNHEEFMQGN FGFASTLLDTLKKYQNNCPVMISSSIQATLAGRFGTSEYGKSKKAGEELMFRYGEETGAKVLVYRFPNLFGKWCRPNYNS AVATFCNNIANDLPITVNDPAVELELLYIDDLVEEMIAALKGEEHRCEFDGVETVLKEDGRYCAVPITHKVTLGEIVRLL EGFKNQPSSLIVPEIPYNSFAKKLYSTFLSYLPKEKVAFPLKMNVDQRGSFTELLRLTNCGQVSINISKPGITKGQHWHH SKWEFFIVVSGHGLIQERKIGTDEMIEFDVSGDRIEVVHMLPGYTHNIINLSDTEDLVTVMWANESFDLNHPDTYFEPVK KE
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45595; Mature: 45595
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILVTGSNGFVGRNLVCQLKNIRDGKARYYGDLTVCAVYEYDIDSTQEELERYCSDCDF CEEEEECCCCCCCCCCEEEECCCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHHCCCCE VFNLAGVNRPQNHEEFMQGNFGFASTLLDTLKKYQNNCPVMISSSIQATLAGRFGTSEYG EEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCHHHC KSKKAGEELMFRYGEETGAKVLVYRFPNLFGKWCRPNYNSAVATFCNNIANDLPITVNDP CCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCC AVELELLYIDDLVEEMIAALKGEEHRCEFDGVETVLKEDGRYCAVPITHKVTLGEIVRLL CEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH EGFKNQPSSLIVPEIPYNSFAKKLYSTFLSYLPKEKVAFPLKMNVDQRGSFTELLRLTNC HHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCC GQVSINISKPGITKGQHWHHSKWEFFIVVSGHGLIQERKIGTDEMIEFDVSGDRIEVVHM CEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCEEEEECCCCEEEEEEE LPGYTHNIINLSDTEDLVTVMWANESFDLNHPDTYFEPVKKE CCCCCCCEEECCCCCCEEEEEEECCCCCCCCCHHHCCCCCCC >Mature Secondary Structure MKILVTGSNGFVGRNLVCQLKNIRDGKARYYGDLTVCAVYEYDIDSTQEELERYCSDCDF CEEEEECCCCCCCCCCEEEECCCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHHCCCCE VFNLAGVNRPQNHEEFMQGNFGFASTLLDTLKKYQNNCPVMISSSIQATLAGRFGTSEYG EEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCHHHC KSKKAGEELMFRYGEETGAKVLVYRFPNLFGKWCRPNYNSAVATFCNNIANDLPITVNDP CCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCC AVELELLYIDDLVEEMIAALKGEEHRCEFDGVETVLKEDGRYCAVPITHKVTLGEIVRLL CEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH EGFKNQPSSLIVPEIPYNSFAKKLYSTFLSYLPKEKVAFPLKMNVDQRGSFTELLRLTNC HHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCC GQVSINISKPGITKGQHWHHSKWEFFIVVSGHGLIQERKIGTDEMIEFDVSGDRIEVVHM CEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCEEEEECCCCEEEEEEE LPGYTHNIINLSDTEDLVTVMWANESFDLNHPDTYFEPVKKE CCCCCCCEEECCCCCCEEEEEEECCCCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA