Click here to switch to the map view.

The map label for this gene is 150010180

Identifier: 150010180

GI number: 150010180

Start: 4414548

End: 4415270

Strand: Direct

Name: 150010180

Synonym: BDI_3603

Alternate gene names: NA

Gene position: 4414548-4415270 (Clockwise)

Preceding gene: 150010176

Following gene: 150010181

Centisome position: 91.75

GC content: 42.6

Gene sequence:

>723_bases
ATGATGAATCAGACAAATTCGGGATTCTTGAATAGTATCCCGCCGGTAACGAAAAATCTTATCATTATAAACTTGCTATT
TTGGGTAGCCAGCCTTGCACTGCCGAAAGTCGGCATCGATTTGGTGGATTTATTAGGGCTTCACTTCCCGGGTGCTACCG
ACTTCAAGGCTTATCAGATCGTTTCTTATATGTTCATGCACGATACCCATTCGTTTGCGCATGTGTTTTTTAATATGTTC
GCCGTTTATATGTTCGGCCGGGTATTGGAGAACGTATGGGGCCCCAAACGTTTCTTGATTTTTTACTTCGTGACGGGTAT
AGGCGCCGGTTTGGTACAAGAAGTGGTATGGTTCTTTAATTTGCGGGATGTGATCTTCGCTAGCCAAGACATGATAAACT
TGAATGGAGCCCAGATTATCAGCAAAAGCGAGTTCTTGAATTATTTCGTGACCATTGGCGCTTCGGGTGCCGTATTCGGA
ATCTTGTTGGCATTCGCGATGATCTTCCCGAATGTTCCTTTGTACTTGATGTTCATACCGATCCCGATTAAAGCCAAATA
TTTCGTAATATTTTATGGTCTTGCCGAACTATTTATGGGTGTGGCTAGTTTTGGTGGCGATACGGTAGCGCATTTCGCTC
ATTTGGGGGGTATGTTATTCGGTTATTTCCTAATTCGTTATTGGAAAAAGAAAGATGCAGACAATGGACGGTATTTTTAC
TAA

Upstream 100 bases:

>100_bases
GAAAAACCTACTTTTTTTACCGATTTACATATGTTTTAGTATTATTATGGGCAAAAACGGCTAAAATATATTTACCTTTG
CCGCTAAATTAACGTAGTAT

Downstream 100 bases:

>100_bases
TTTGAAGCGTATGTTTCAGTCGGGCAATATCCTGTCGAAACTGATATATATAAATGTAGGCTTGTTTATCTTGATACGTT
TGGCCAGCGTATTGTTTATG

Product: rhomboid family protein

Products: NA

Alternate protein names: Transmembrane Rhomboid Family Protein; Peptidase; Integral Membrane Protein; Cytoplasmic Membrane Protein; Rhomboid-Like Protein; Rhomboid Protein; Rhomboid Family Membrane Protein; Intramembrane Protease; Serine Protease

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MMNQTNSGFLNSIPPVTKNLIIINLLFWVASLALPKVGIDLVDLLGLHFPGATDFKAYQIVSYMFMHDTHSFAHVFFNMF
AVYMFGRVLENVWGPKRFLIFYFVTGIGAGLVQEVVWFFNLRDVIFASQDMINLNGAQIISKSEFLNYFVTIGASGAVFG
ILLAFAMIFPNVPLYLMFIPIPIKAKYFVIFYGLAELFMGVASFGGDTVAHFAHLGGMLFGYFLIRYWKKKDADNGRYFY

Sequences:

>Translated_240_residues
MMNQTNSGFLNSIPPVTKNLIIINLLFWVASLALPKVGIDLVDLLGLHFPGATDFKAYQIVSYMFMHDTHSFAHVFFNMF
AVYMFGRVLENVWGPKRFLIFYFVTGIGAGLVQEVVWFFNLRDVIFASQDMINLNGAQIISKSEFLNYFVTIGASGAVFG
ILLAFAMIFPNVPLYLMFIPIPIKAKYFVIFYGLAELFMGVASFGGDTVAHFAHLGGMLFGYFLIRYWKKKDADNGRYFY
>Mature_240_residues
MMNQTNSGFLNSIPPVTKNLIIINLLFWVASLALPKVGIDLVDLLGLHFPGATDFKAYQIVSYMFMHDTHSFAHVFFNMF
AVYMFGRVLENVWGPKRFLIFYFVTGIGAGLVQEVVWFFNLRDVIFASQDMINLNGAQIISKSEFLNYFVTIGASGAVFG
ILLAFAMIFPNVPLYLMFIPIPIKAKYFVIFYGLAELFMGVASFGGDTVAHFAHLGGMLFGYFLIRYWKKKDADNGRYFY

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27218; Mature: 27218

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNQTNSGFLNSIPPVTKNLIIINLLFWVASLALPKVGIDLVDLLGLHFPGATDFKAYQI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH
VSYMFMHDTHSFAHVFFNMFAVYMFGRVLENVWGPKRFLIFYFVTGIGAGLVQEVVWFFN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH
LRDVIFASQDMINLNGAQIISKSEFLNYFVTIGASGAVFGILLAFAMIFPNVPLYLMFIP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
IPIKAKYFVIFYGLAELFMGVASFGGDTVAHFAHLGGMLFGYFLIRYWKKKDADNGRYFY
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA