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The map label for this gene is rimP

Identifier: 150010112

GI number: 150010112

Start: 4322546

End: 4323013

Strand: Direct

Name: rimP

Synonym: BDI_3532

Alternate gene names: 150010112

Gene position: 4322546-4323013 (Clockwise)

Preceding gene: 150010108

Following gene: 150010113

Centisome position: 89.84

GC content: 44.23

Gene sequence:

>468_bases
ATGATAGAAAAGAAAGTGGTAAGCCAATTAATAGAGGAAAAACTAGCCTCTTCAAGCAATTATTTAGTAGACGTGGTGAT
TAAACCGGGAAACCTGATAGTCGTTGAAATTGATAACGATGAAGCGGTAAGCATTGATGATTGCGCTGAGTTGAGCCGGT
ATTTGGAGGAGCATCTGGATCGTGACGTCGAGGATTATGAGCTGGAGGTTGGCTCCGCCGGCATTACTTCTCCTTTCAAG
GTACTTCGCCAATACGTCAAGAACATCGGAAACGAGGTGGAGATGCTGTTGAAAAACGGCTCGAAGCTGACCGGTGTGTT
GAAATCTGCCGACGAGAACGGTGTGGTTGTCTCTGTCGAGAAGAAGGTGAAACCGGAAGGCGCTAAGCGGAAGGTGACTG
TGGTGGAGGATGAGTCGTATACATTTGATGAAATAAAATATACAAAATACTTAATAAGATTCAAGTAA

Upstream 100 bases:

>100_bases
ATTTTGAGAACTCATTGATTTTTTGTATATTTGCGGGCGATTAAGTGAAGTTGAGGAGGGGGCGGGTAGTCCCCTTCTTT
TGTTCTTAACAGATATGTGT

Downstream 100 bases:

>100_bases
GATTATGGCCAAGAAAGAGGAAACAATCAGTATGATTGACACCCTTGCGGAGTTCAAGGAGTTGAAGAATATCGATAAAG
ATACGATGATTAGCGTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MIEKKVVSQLIEEKLASSSNYLVDVVIKPGNLIVVEIDNDEAVSIDDCAELSRYLEEHLDRDVEDYELEVGSAGITSPFK
VLRQYVKNIGNEVEMLLKNGSKLTGVLKSADENGVVVSVEKKVKPEGAKRKVTVVEDESYTFDEIKYTKYLIRFK

Sequences:

>Translated_155_residues
MIEKKVVSQLIEEKLASSSNYLVDVVIKPGNLIVVEIDNDEAVSIDDCAELSRYLEEHLDRDVEDYELEVGSAGITSPFK
VLRQYVKNIGNEVEMLLKNGSKLTGVLKSADENGVVVSVEKKVKPEGAKRKVTVVEDESYTFDEIKYTKYLIRFK
>Mature_155_residues
MIEKKVVSQLIEEKLASSSNYLVDVVIKPGNLIVVEIDNDEAVSIDDCAELSRYLEEHLDRDVEDYELEVGSAGITSPFK
VLRQYVKNIGNEVEMLLKNGSKLTGVLKSADENGVVVSVEKKVKPEGAKRKVTVVEDESYTFDEIKYTKYLIRFK

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_PARD8 (A6LHR9)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001304855.1
- ProteinModelPortal:   A6LHR9
- STRING:   A6LHR9
- GeneID:   5308681
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_3532
- eggNOG:   NOG78765
- HOGENOM:   HBG668072
- OMA:   ENCIDSE
- ProtClustDB:   PRK02001
- BioCyc:   PDIS435591:BDI_3532-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17460; Mature: 17460

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKKVVSQLIEEKLASSSNYLVDVVIKPGNLIVVEIDNDEAVSIDDCAELSRYLEEHLD
CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCEECHHHHHHHHHHHHHHHC
RDVEDYELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKNGSKLTGVLKSADENGVVVSVE
CCCCCEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
KKVKPEGAKRKVTVVEDESYTFDEIKYTKYLIRFK
CCCCCCCCCEEEEEEECCCCCHHHHHHHHEEEEEC
>Mature Secondary Structure
MIEKKVVSQLIEEKLASSSNYLVDVVIKPGNLIVVEIDNDEAVSIDDCAELSRYLEEHLD
CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCEECHHHHHHHHHHHHHHHC
RDVEDYELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKNGSKLTGVLKSADENGVVVSVE
CCCCCEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
KKVKPEGAKRKVTVVEDESYTFDEIKYTKYLIRFK
CCCCCCCCCEEEEEEECCCCCHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA