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The map label for this gene is 150010034

Identifier: 150010034

GI number: 150010034

Start: 4209381

End: 4209893

Strand: Direct

Name: 150010034

Synonym: BDI_3453

Alternate gene names: NA

Gene position: 4209381-4209893 (Clockwise)

Preceding gene: 150010033

Following gene: 150010035

Centisome position: 87.49

GC content: 46.78

Gene sequence:

>513_bases
ATGGCTGCTATTACCACCCAAGAATTTGAACATCATTTCAAGAGTTTATATAAGCCCTTGTGTTTGTTTGCGCTTCGTTA
TACCGATCAGGTGGACGATGCCGAGGATATCGTGCAACAGGCTTTCGCGGATGTATGGGATAAGAACCGGGCTGGTAATG
TGATCGGGAATCTCAAGGCTTATTTATATCAAGCGGTGAGGAACCGTTCTCTTTCATTTACCTCACAACCCGTAAACGCT
GAGGCCACCGAGCAGTTACCCGACGTAGAAGATACCTCGGAAGAGGAAGACATCCTGCGATCGGAGCGTGACGCTCGCCT
GTGGGACGCTATCGATCGGTTACCTCCCGAACGGAAGAAGATTTTCTTGTTATCCAAACGGGATGGCTTGAAATACCAAG
AGATTGCGGAGGAATTGAATTTATCGGTAAAAACGGTTGAGAACCAGATGAGCAAGGCATTGAAAGCTTTGCGAGAGACC
GCTATCCGTGTTTATATGTTCTTTTTCGGATAA

Upstream 100 bases:

>100_bases
CGCTTTCTTTTTATTAAAACCATTATAAAGAACCTGAAAAGCGATTTGTTAAAAAGAAAAGGTTGTTACTTTGCGGTGAA
TAGTTACAGATAACAAACGT

Downstream 100 bases:

>100_bases
ATTTTATAGAAAGGAATGGGGGTTTTTCATATTTCTCTGTCTTAGAGATAAAGGTTACTTGTTTATTTCATTAAAGCATG
GAGAGTGTATGAGGAAGTTG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; Sigma-; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; ECF Family RNA Polymerase Sigma-70 Factor; Sigma Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; ECF Subfamily RNA Polymerase Sigma Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MAAITTQEFEHHFKSLYKPLCLFALRYTDQVDDAEDIVQQAFADVWDKNRAGNVIGNLKAYLYQAVRNRSLSFTSQPVNA
EATEQLPDVEDTSEEEDILRSERDARLWDAIDRLPPERKKIFLLSKRDGLKYQEIAEELNLSVKTVENQMSKALKALRET
AIRVYMFFFG

Sequences:

>Translated_170_residues
MAAITTQEFEHHFKSLYKPLCLFALRYTDQVDDAEDIVQQAFADVWDKNRAGNVIGNLKAYLYQAVRNRSLSFTSQPVNA
EATEQLPDVEDTSEEEDILRSERDARLWDAIDRLPPERKKIFLLSKRDGLKYQEIAEELNLSVKTVENQMSKALKALRET
AIRVYMFFFG
>Mature_169_residues
AAITTQEFEHHFKSLYKPLCLFALRYTDQVDDAEDIVQQAFADVWDKNRAGNVIGNLKAYLYQAVRNRSLSFTSQPVNAE
ATEQLPDVEDTSEEEDILRSERDARLWDAIDRLPPERKKIFLLSKRDGLKYQEIAEELNLSVKTVENQMSKALKALRETA
IRVYMFFFG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19711; Mature: 19580

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAITTQEFEHHFKSLYKPLCLFALRYTDQVDDAEDIVQQAFADVWDKNRAGNVIGNLKA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
YLYQAVRNRSLSFTSQPVNAEATEQLPDVEDTSEEEDILRSERDARLWDAIDRLPPERKK
HHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHE
IFLLSKRDGLKYQEIAEELNLSVKTVENQMSKALKALRETAIRVYMFFFG
EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAITTQEFEHHFKSLYKPLCLFALRYTDQVDDAEDIVQQAFADVWDKNRAGNVIGNLKA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
YLYQAVRNRSLSFTSQPVNAEATEQLPDVEDTSEEEDILRSERDARLWDAIDRLPPERKK
HHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHE
IFLLSKRDGLKYQEIAEELNLSVKTVENQMSKALKALRETAIRVYMFFFG
EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA