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The map label for this gene is rbfA [H]

Identifier: 150009888

GI number: 150009888

Start: 3997718

End: 3998053

Strand: Direct

Name: rbfA [H]

Synonym: BDI_3304

Alternate gene names: 150009888

Gene position: 3997718-3998053 (Clockwise)

Preceding gene: 150009887

Following gene: 150009889

Centisome position: 83.09

GC content: 41.37

Gene sequence:

>336_bases
ATGGAAAGTACTAGATTACAAAAGATCGAACGCCTTCTTCAGAAGGAGTTGAGTGATATATTTCAGAAGCAGACGCAAGG
AATGCATGGCGTATTGGTCTCTGTCAGCGTAGTTCGTGTAAGTCCGGATTTAAGTGTGGCGAGAGCTTATTTAAGCATTT
TCCCGTCGGACAAATCGCAAGAGCTATTGGAGGCTATACGGAGCAATACGAAAGCGATCCGTTTTGATTTGGGGCAACGT
ATTCGTTTGCAGGTTCGTAAGATTCCTGAATTGAGCTTCTTTATAGACGATTCATTGGATTATATCGAGAATATCGACAA
TCTTTTGCATAAGTAA

Upstream 100 bases:

>100_bases
TTTTAATGAAAAGGTTAAGCAAGACGATCGGGTAGAGAAGGTGATCCTCCCTTTACGTGACGGCTTGACGATGATCTGGA
AAAAGTAAATAATAAAGCGT

Downstream 100 bases:

>100_bases
TCAGAGGAGCCTTGAATCTTCCGTTCTATATAGCCCGGCGATATCTCTTTTCGAAGAAGTCGCACAATGCCATAAATATC
ATATCGATGGTATCGGTATG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MESTRLQKIERLLQKELSDIFQKQTQGMHGVLVSVSVVRVSPDLSVARAYLSIFPSDKSQELLEAIRSNTKAIRFDLGQR
IRLQVRKIPELSFFIDDSLDYIENIDNLLHK

Sequences:

>Translated_111_residues
MESTRLQKIERLLQKELSDIFQKQTQGMHGVLVSVSVVRVSPDLSVARAYLSIFPSDKSQELLEAIRSNTKAIRFDLGQR
IRLQVRKIPELSFFIDDSLDYIENIDNLLHK
>Mature_111_residues
MESTRLQKIERLLQKELSDIFQKQTQGMHGVLVSVSVVRVSPDLSVARAYLSIFPSDKSQELLEAIRSNTKAIRFDLGQR
IRLQVRKIPELSFFIDDSLDYIENIDNLLHK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 12829; Mature: 12829

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTRLQKIERLLQKELSDIFQKQTQGMHGVLVSVSVVRVSPDLSVARAYLSIFPSDKSQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHH
ELLEAIRSNTKAIRFDLGQRIRLQVRKIPELSFFIDDSLDYIENIDNLLHK
HHHHHHHCCCCEEECCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MESTRLQKIERLLQKELSDIFQKQTQGMHGVLVSVSVVRVSPDLSVARAYLSIFPSDKSQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHH
ELLEAIRSNTKAIRFDLGQRIRLQVRKIPELSFFIDDSLDYIENIDNLLHK
HHHHHHHCCCCEEECCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA