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The map label for this gene is rpoE [C]

Identifier: 150009693

GI number: 150009693

Start: 3733823

End: 3734389

Strand: Direct

Name: rpoE [C]

Synonym: BDI_3108

Alternate gene names: 150009693

Gene position: 3733823-3734389 (Clockwise)

Preceding gene: 150009692

Following gene: 150009694

Centisome position: 77.6

GC content: 39.51

Gene sequence:

>567_bases
ATGAAAGTGGATGGACATTTGCTTATAGATCTGAAGAATGGAGATGAAAAGGCTTTTGAGACTCTATTCTGGAAATATAA
TGAGCATGTATATCATTTTATTTACTCATTACTATATGAAAAATCTATGGCAGAGGACTTGACCCAAAACGTTTTTCTTA
AGATTTGGGAGAAGCATGAGACGATAGATGTGGAGCAAAACTTTGACGCCTATCTATTCACCATCGCCCGTAACTTAGTT
TATAAAGAGACAGAGAATCGGCTACTCTCCGAGAAACTGACGGAAAGCCTACAACGACAGCTATCAGATGTTGATTCGCT
TATGGAAGAGCGAATTGATGCGGAGTCTTTACGGGAATATATTAATAGCTTGATAGAAGAATTGCCGTTGTCCCGTCGGG
AGATATTTCGTTTGAGCCGTCATGAGCATTTATCCTATAAAGAAATAGCGGAACGCCTCTCTATCTCTGAAAAGACTGTG
GAGACACAGTTGAGTAGGGCTTTGCGTTTTTTGCGAGATCGACTTTCTTCTGATGGCTTTCTTTGCCTTATAACACTCTT
TTTATAG

Upstream 100 bases:

>100_bases
TAACCGACATAGTTTCATCAGAACTCATGTATATGAAAACTGCAAATATGCAGAAAGGAGATAAGATTTGTATGGCGTGG
ATATGTAATATATATGTAAT

Downstream 100 bases:

>100_bases
TTAATAAGCATTAAATATCTTGTGGTTTGTAGGGGTAGATAGTTTTATCGGATATACGTATGTATATGATTGGAGTGGAA
AATGTATTTGTCGATTGATT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-H Factor; Sigma Factor; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDAYLFTIARNLV
YKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREYINSLIEELPLSRREIFRLSRHEHLSYKEIAERLSISEKTV
ETQLSRALRFLRDRLSSDGFLCLITLFL

Sequences:

>Translated_188_residues
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDAYLFTIARNLV
YKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREYINSLIEELPLSRREIFRLSRHEHLSYKEIAERLSISEKTV
ETQLSRALRFLRDRLSSDGFLCLITLFL
>Mature_188_residues
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDAYLFTIARNLV
YKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREYINSLIEELPLSRREIFRLSRHEHLSYKEIAERLSISEKTV
ETQLSRALRFLRDRLSSDGFLCLITLFL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22517; Mature: 22517

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHE
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TIDVEQNFDAYLFTIARNLVYKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREY
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
INSLIEELPLSRREIFRLSRHEHLSYKEIAERLSISEKTVETQLSRALRFLRDRLSSDGF
HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LCLITLFL
HHHHHHHC
>Mature Secondary Structure
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHE
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TIDVEQNFDAYLFTIARNLVYKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREY
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
INSLIEELPLSRREIFRLSRHEHLSYKEIAERLSISEKTVETQLSRALRFLRDRLSSDGF
HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LCLITLFL
HHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA