| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is hsdR [C]
Identifier: 150009566
GI number: 150009566
Start: 3566512
End: 3569400
Strand: Reverse
Name: hsdR [C]
Synonym: BDI_2979
Alternate gene names: 150009566
Gene position: 3569400-3566512 (Counterclockwise)
Preceding gene: 150009567
Following gene: 150009565
Centisome position: 74.19
GC content: 39.67
Gene sequence:
>2889_bases ATGAGAAACGATATATCCTTGGAATTGGCAAGCCGATTAACGGAACAAGTCAAAACTGCCTTTGAAAACGGCAGTTTATT AGATGCCGTTACCCCGGTAACACAAGATTTGCTGAAGTTTTGGTTCATGGGGCCTTATACGGAAGAACGCTCCAAGAACT TTCATAAAGGACAAAAACAAAGTATTCTAAACATCATTTATCTGCATGAAGTTTTACAAGTGACAACCGTAGAAGAAATA TACCGGCAAGTTGCGCCGGATCTATTAGCCGAATGTAATCTAAGTGATTTGGCTAAAGAAAAATATCGTATTCCCAAATA TGCCGTAAAGATGGCAACCGGAACAGGTAAGACATGGGTCATGCACGCTTTACTTTTATGGCAACTCCTTAACGCACGAC ATGAAGAACAAGAAGAACGAAGCGGACGCTACACCCAAAACTTCCTGATCGTAGCTCCTGGCCTGATTGTTTATGATCGG CTAAAGGATGCCTATTGTGGACGCCTGAAAGAGAATAGCACGGAAAGAGATCCTTTTACAAATGACCTCTATCTGCATAA AGATCTTTTCATACCTCCGGCTTATCGGGACGAAGTATTCTCTTTTATACAAAACAATGTTGTCACCAAAGAAGAGGGAA TCGGACGAAAAATAACCGGAAACGGACTGATCGCCTTAACCAACTGGCATCTGTTCTTGTCTGATGAAGAGAAAGAGAAT ATGGTCCCAGACTCCGCTCCCTCTATTATAAGAGATTTATTGCCTATTACACCAGGCCTGAGTGGTGGTAATGTCTTAGA GGCACTGGATAGGAAATACCTACGAGGAAGCGAATTGGACTATTTATCCGAACTATCGGACTTAATGGTAATCAATGACG AAGCCCATCATATCCATGAGAATAAAAAGCAAGGAGAAATAGAAGAGGTTGAATGGCAAAAAGGATTGAATAAGATTGCC CACAACAAAGGAGGTCACTTCATCCAAATCGACTTCTCAGCTACACCCTACGATACGGTCGGTTCCGGGAAGAAAAAGAT GAAATGTTATTTCCCGCATATTATATCTGACTTTGATTTAAGCCAAGCGATGAAAAGCGGATTGGTTAAGACCTTGTTGT TGGATCGCCGACAAGAATTGACAGATCTTGCCAATCTGGATTATAACGCTTTACGTGATGAACGAAAAAAAGTGATTGGA TTGAGCGACGGACAACGTTTAATGCTTCGTGCCGGATTACGAAAATTAAAAATCCTTGAAGAAGGTTTTATCAAGCTGGA TTCTAAGAAACGACCGAAGATGATGGTGATTTGTGAGGATACCAATGTCACCCCGTTTGTCGAATCATTCCTAAAAGAAG AGGGATTAGCCGAAAAGGATGTTCTCCGTATTGACAGCAACGCTAAAGGCGAAGTAAAAGAAAAAGATTGGATGCAGGTC AAAGAACGATTGTTCAATATCGATAAATATGAATCACCCAAAGTCATCGTTTCCGTGTTGATGCTTCGGGAAGGTTTCGA TGTCAACAATATATGTGTCATCGTACCGTTACGATCTACGCAATCCGCTATTTTGTTGGAACAAACCGTAGGGCGTGGTC TTCGTTTGATGTGGAGAGAGCCTGAATATTCAGAAGAAAAAAGGGAAAACCGATTGCAAGTATTGGTTAAAAAGAAAGCA CCTAAATCTTATATCGATATGCTTTCCATCATTGAACATCCGGCCTTTCTTGATTTCTACAATGATTTGATGAACGAAGA GCTTGCCGGTATAGACGAAGGTGATTTGCCGGATGGCTCCAATGTAACTGGTGATATTATAAAGGTAGGGTTAAAAGACA ATTATCAAGACTATGATTTATTCTGGCCTCTTATTATCAAAGAGCAAGAGGAGGAGATACATCCTTCAGAAATAGATATA AACAGACTCGCACCTTTTACAGACTTTTCGTATGAACAACTAAAAGAAATTTTGGCGAAACCCGGTGAATCCTTTATCTC GCATGACGTCTTAGTCGGTACTCAATTCGGCAAATATGAGGTAAACGCAGACTTATGCAATGCACAAAGCTACAATGAAT ACTTGCAAAAGGTATTACGCATCGTCACAACACGCTTCGACAAGGTAGGAAGGAGTAAGCCTAAGGAACTACCTACATTG CAAATTAATCAGCAAGAAATCATACGGGTCATCGACCGATATATCCGAACCAAGTTATTTTCACGTTCATTCAATCCGTT CGAGAATTATAATTGGAAGATTTTACTACACAATGAGGGAGTCGCGACCCAGCATATTGTAAGAGAGATCAGTAAGGCGA TCTATTATATGCAAGAACAAATAGATATAACAGATGCAATAGTTGAGAAGATTTATTTTTCTTCCATACCTACACTACGT ATACGAGAAAGTTTTTCACTTGATTTGGAAAAGATTATCTATGAAAAAGTGGGCTACCCTTCCAATAAAGGAGGTTTCGA GAAAGCTTTCCTTGAATTTTTGGATGCCGACTCGGAAGTGAACTGCTTTATCAAAATAAATGAGAATCAACATAGCTTCG CATCAATCCATTATATCCGGCAGGACGGTCTATTGGCCACCTATCATCCGGACTTTATGGTATGTACATCACAACACATC TATATTATAGAAACGAAAGGACAAGACAAGATTTTCGACAAAAATGTCCGACAAAAACAATTGGCAACTCTTGAATGGTG TAATAAGATTAATCAACTGAGAGCCCAATATAGAATGAATCGACAGTGGCTTTATATATTGTTAAGTGAAAATGATTTTT ATAGTCTAAAACGGAACGGTGCCACGCTTATTGAAATCTGCAATTTGAATAAGGTCTCAGAGAGTGTGGCAACAGGTAAT TTGTTTTGA
Upstream 100 bases:
>100_bases CTCGAAAAGCGGAACGGACGGTTTGCGTGAAAGCGGTCGATGTATTCGGCTTTGAGAGCATGGTAACAGAGACTATTCAT TCTTAAAAACGACACACAAC
Downstream 100 bases:
>100_bases AGGGAGTTGGAGATATCATGATTTTAGTATATGGCCTTATATTATTGGATTGGGAGTGGTAACATAAGGCCGAGGTAAAT CGGAGGATTTGTACTTATTT
Product: Type III restriction-modification enzyme, helicase subunit
Products: DNA; ATP [C]
Alternate protein names: Type III Restriction- Helicase Subunit; Type III Restriction Res Subunit; Type III Restriction-; PstII Restriction- Res Subunit; Type III Restriction; Type III Restriction- System R Subunit
Number of amino acids: Translated: 962; Mature: 962
Protein sequence:
>962_residues MRNDISLELASRLTEQVKTAFENGSLLDAVTPVTQDLLKFWFMGPYTEERSKNFHKGQKQSILNIIYLHEVLQVTTVEEI YRQVAPDLLAECNLSDLAKEKYRIPKYAVKMATGTGKTWVMHALLLWQLLNARHEEQEERSGRYTQNFLIVAPGLIVYDR LKDAYCGRLKENSTERDPFTNDLYLHKDLFIPPAYRDEVFSFIQNNVVTKEEGIGRKITGNGLIALTNWHLFLSDEEKEN MVPDSAPSIIRDLLPITPGLSGGNVLEALDRKYLRGSELDYLSELSDLMVINDEAHHIHENKKQGEIEEVEWQKGLNKIA HNKGGHFIQIDFSATPYDTVGSGKKKMKCYFPHIISDFDLSQAMKSGLVKTLLLDRRQELTDLANLDYNALRDERKKVIG LSDGQRLMLRAGLRKLKILEEGFIKLDSKKRPKMMVICEDTNVTPFVESFLKEEGLAEKDVLRIDSNAKGEVKEKDWMQV KERLFNIDKYESPKVIVSVLMLREGFDVNNICVIVPLRSTQSAILLEQTVGRGLRLMWREPEYSEEKRENRLQVLVKKKA PKSYIDMLSIIEHPAFLDFYNDLMNEELAGIDEGDLPDGSNVTGDIIKVGLKDNYQDYDLFWPLIIKEQEEEIHPSEIDI NRLAPFTDFSYEQLKEILAKPGESFISHDVLVGTQFGKYEVNADLCNAQSYNEYLQKVLRIVTTRFDKVGRSKPKELPTL QINQQEIIRVIDRYIRTKLFSRSFNPFENYNWKILLHNEGVATQHIVREISKAIYYMQEQIDITDAIVEKIYFSSIPTLR IRESFSLDLEKIIYEKVGYPSNKGGFEKAFLEFLDADSEVNCFIKINENQHSFASIHYIRQDGLLATYHPDFMVCTSQHI YIIETKGQDKIFDKNVRQKQLATLEWCNKINQLRAQYRMNRQWLYILLSENDFYSLKRNGATLIEICNLNKVSESVATGN LF
Sequences:
>Translated_962_residues MRNDISLELASRLTEQVKTAFENGSLLDAVTPVTQDLLKFWFMGPYTEERSKNFHKGQKQSILNIIYLHEVLQVTTVEEI YRQVAPDLLAECNLSDLAKEKYRIPKYAVKMATGTGKTWVMHALLLWQLLNARHEEQEERSGRYTQNFLIVAPGLIVYDR LKDAYCGRLKENSTERDPFTNDLYLHKDLFIPPAYRDEVFSFIQNNVVTKEEGIGRKITGNGLIALTNWHLFLSDEEKEN MVPDSAPSIIRDLLPITPGLSGGNVLEALDRKYLRGSELDYLSELSDLMVINDEAHHIHENKKQGEIEEVEWQKGLNKIA HNKGGHFIQIDFSATPYDTVGSGKKKMKCYFPHIISDFDLSQAMKSGLVKTLLLDRRQELTDLANLDYNALRDERKKVIG LSDGQRLMLRAGLRKLKILEEGFIKLDSKKRPKMMVICEDTNVTPFVESFLKEEGLAEKDVLRIDSNAKGEVKEKDWMQV KERLFNIDKYESPKVIVSVLMLREGFDVNNICVIVPLRSTQSAILLEQTVGRGLRLMWREPEYSEEKRENRLQVLVKKKA PKSYIDMLSIIEHPAFLDFYNDLMNEELAGIDEGDLPDGSNVTGDIIKVGLKDNYQDYDLFWPLIIKEQEEEIHPSEIDI NRLAPFTDFSYEQLKEILAKPGESFISHDVLVGTQFGKYEVNADLCNAQSYNEYLQKVLRIVTTRFDKVGRSKPKELPTL QINQQEIIRVIDRYIRTKLFSRSFNPFENYNWKILLHNEGVATQHIVREISKAIYYMQEQIDITDAIVEKIYFSSIPTLR IRESFSLDLEKIIYEKVGYPSNKGGFEKAFLEFLDADSEVNCFIKINENQHSFASIHYIRQDGLLATYHPDFMVCTSQHI YIIETKGQDKIFDKNVRQKQLATLEWCNKINQLRAQYRMNRQWLYILLSENDFYSLKRNGATLIEICNLNKVSESVATGN LF >Mature_962_residues MRNDISLELASRLTEQVKTAFENGSLLDAVTPVTQDLLKFWFMGPYTEERSKNFHKGQKQSILNIIYLHEVLQVTTVEEI YRQVAPDLLAECNLSDLAKEKYRIPKYAVKMATGTGKTWVMHALLLWQLLNARHEEQEERSGRYTQNFLIVAPGLIVYDR LKDAYCGRLKENSTERDPFTNDLYLHKDLFIPPAYRDEVFSFIQNNVVTKEEGIGRKITGNGLIALTNWHLFLSDEEKEN MVPDSAPSIIRDLLPITPGLSGGNVLEALDRKYLRGSELDYLSELSDLMVINDEAHHIHENKKQGEIEEVEWQKGLNKIA HNKGGHFIQIDFSATPYDTVGSGKKKMKCYFPHIISDFDLSQAMKSGLVKTLLLDRRQELTDLANLDYNALRDERKKVIG LSDGQRLMLRAGLRKLKILEEGFIKLDSKKRPKMMVICEDTNVTPFVESFLKEEGLAEKDVLRIDSNAKGEVKEKDWMQV KERLFNIDKYESPKVIVSVLMLREGFDVNNICVIVPLRSTQSAILLEQTVGRGLRLMWREPEYSEEKRENRLQVLVKKKA PKSYIDMLSIIEHPAFLDFYNDLMNEELAGIDEGDLPDGSNVTGDIIKVGLKDNYQDYDLFWPLIIKEQEEEIHPSEIDI NRLAPFTDFSYEQLKEILAKPGESFISHDVLVGTQFGKYEVNADLCNAQSYNEYLQKVLRIVTTRFDKVGRSKPKELPTL QINQQEIIRVIDRYIRTKLFSRSFNPFENYNWKILLHNEGVATQHIVREISKAIYYMQEQIDITDAIVEKIYFSSIPTLR IRESFSLDLEKIIYEKVGYPSNKGGFEKAFLEFLDADSEVNCFIKINENQHSFASIHYIRQDGLLATYHPDFMVCTSQHI YIIETKGQDKIFDKNVRQKQLATLEWCNKINQLRAQYRMNRQWLYILLSENDFYSLKRNGATLIEICNLNKVSESVATGN LF
Specific function: The Ecoki Enzyme Recognizes 5'-Aacn(6)GTGC-3'. Subunit R Is Required For Both Nuclease And Atpase Activities, But Not For Modification. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.1.21.3 [C]
Molecular weight: Translated: 111321; Mature: 111321
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNDISLELASRLTEQVKTAFENGSLLDAVTPVTQDLLKFWFMGPYTEERSKNFHKGQKQ CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCHHH SILNIIYLHEVLQVTTVEEIYRQVAPDLLAECNLSDLAKEKYRIPKYAVKMATGTGKTWV HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHCCCHHEEEEECCCCHHHH MHALLLWQLLNARHEEQEERSGRYTQNFLIVAPGLIVYDRLKDAYCGRLKENSTERDPFT HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC NDLYLHKDLFIPPAYRDEVFSFIQNNVVTKEEGIGRKITGNGLIALTNWHLFLSDEEKEN CCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEEEEECCCHHHC MVPDSAPSIIRDLLPITPGLSGGNVLEALDRKYLRGSELDYLSELSDLMVINDEAHHIHE CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCHHHHHC NKKQGEIEEVEWQKGLNKIAHNKGGHFIQIDFSATPYDTVGSGKKKMKCYFPHIISDFDL CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHCCCCH SQAMKSGLVKTLLLDRRQELTDLANLDYNALRDERKKVIGLSDGQRLMLRAGLRKLKILE HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHH EGFIKLDSKKRPKMMVICEDTNVTPFVESFLKEEGLAEKDVLRIDSNAKGEVKEKDWMQV HHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHH KERLFNIDKYESPKVIVSVLMLREGFDVNNICVIVPLRSTQSAILLEQTVGRGLRLMWRE HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECC PEYSEEKRENRLQVLVKKKAPKSYIDMLSIIEHPAFLDFYNDLMNEELAGIDEGDLPDGS CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC NVTGDIIKVGLKDNYQDYDLFWPLIIKEQEEEIHPSEIDINRLAPFTDFSYEQLKEILAK CCCCHHEEECCCCCCCCCCEEEEEEEECCHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHC PGESFISHDVLVGTQFGKYEVNADLCNAQSYNEYLQKVLRIVTTRFDKVGRSKPKELPTL CCHHHHCCCEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE QINQQEIIRVIDRYIRTKLFSRSFNPFENYNWKILLHNEGVATQHIVREISKAIYYMQEQ EECHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH IDITDAIVEKIYFSSIPTLRIRESFSLDLEKIIYEKVGYPSNKGGFEKAFLEFLDADSEV CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCE NCFIKINENQHSFASIHYIRQDGLLATYHPDFMVCTSQHIYIIETKGQDKIFDKNVRQKQ EEEEEECCCCCCHHHEEEECCCCEEEEECCCEEEECCCEEEEEEECCCCCHHHCCHHHHH LATLEWCNKINQLRAQYRMNRQWLYILLSENDFYSLKRNGATLIEICNLNKVSESVATGN HHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCEEEEEECCCHHHHHHHCCC LF CC >Mature Secondary Structure MRNDISLELASRLTEQVKTAFENGSLLDAVTPVTQDLLKFWFMGPYTEERSKNFHKGQKQ CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCHHH SILNIIYLHEVLQVTTVEEIYRQVAPDLLAECNLSDLAKEKYRIPKYAVKMATGTGKTWV HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHCCCHHEEEEECCCCHHHH MHALLLWQLLNARHEEQEERSGRYTQNFLIVAPGLIVYDRLKDAYCGRLKENSTERDPFT HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC NDLYLHKDLFIPPAYRDEVFSFIQNNVVTKEEGIGRKITGNGLIALTNWHLFLSDEEKEN CCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEEEEECCCHHHC MVPDSAPSIIRDLLPITPGLSGGNVLEALDRKYLRGSELDYLSELSDLMVINDEAHHIHE CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCHHHHHC NKKQGEIEEVEWQKGLNKIAHNKGGHFIQIDFSATPYDTVGSGKKKMKCYFPHIISDFDL CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHCCCCH SQAMKSGLVKTLLLDRRQELTDLANLDYNALRDERKKVIGLSDGQRLMLRAGLRKLKILE HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHH EGFIKLDSKKRPKMMVICEDTNVTPFVESFLKEEGLAEKDVLRIDSNAKGEVKEKDWMQV HHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHH KERLFNIDKYESPKVIVSVLMLREGFDVNNICVIVPLRSTQSAILLEQTVGRGLRLMWRE HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECC PEYSEEKRENRLQVLVKKKAPKSYIDMLSIIEHPAFLDFYNDLMNEELAGIDEGDLPDGS CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC NVTGDIIKVGLKDNYQDYDLFWPLIIKEQEEEIHPSEIDINRLAPFTDFSYEQLKEILAK CCCCHHEEECCCCCCCCCCEEEEEEEECCHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHC PGESFISHDVLVGTQFGKYEVNADLCNAQSYNEYLQKVLRIVTTRFDKVGRSKPKELPTL CCHHHHCCCEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE QINQQEIIRVIDRYIRTKLFSRSFNPFENYNWKILLHNEGVATQHIVREISKAIYYMQEQ EECHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH IDITDAIVEKIYFSSIPTLRIRESFSLDLEKIIYEKVGYPSNKGGFEKAFLEFLDADSEV CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCE NCFIKINENQHSFASIHYIRQDGLLATYHPDFMVCTSQHIYIIETKGQDKIFDKNVRQKQ EEEEEECCCCCCHHHEEEECCCCEEEEECCCEEEECCCEEEEEEECCCCCHHHCCHHHHH LATLEWCNKINQLRAQYRMNRQWLYILLSENDFYSLKRNGATLIEICNLNKVSESVATGN HHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCEEEEEECCCHHHHHHHCCC LF CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Random double-stranded fragments with terminal 5'-phosphates; ADP [C]
Specific reaction: Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates; ATP is simultaneously hydrolysed [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA