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The map label for this gene is kdsD [H]

Identifier: 150009487

GI number: 150009487

Start: 3463097

End: 3463708

Strand: Direct

Name: kdsD [H]

Synonym: BDI_2900

Alternate gene names: 150009487

Gene position: 3463097-3463708 (Clockwise)

Preceding gene: 150009486

Following gene: 150009488

Centisome position: 71.98

GC content: 50.0

Gene sequence:

>612_bases
ATGGTAAACGAAAATATCACCTCTTTATTGGAGCAGGAAGCGGAAGCGGTTCGCAACATACCCGTTACACCCGGATATGA
GGAAGCGGTATCGCTTATAGTGAAACATGTACACGACCTAGGTGGAAAACTGATCATGAGTGGAATGGGTAAAGCCGGGC
AAATCGCCTTGAATATCGCTACCACCTTTAGCTCGACCGGTACACCTGCTTTTTTCTTACATCCCAGCGAGGCACAACAC
GGAGATCTGGGAATCGTATGCAAGAACGATATCATGTTATTGATCTCCAACTCAGGAAAGACACGTGAACTGGTGGAATT
GGTAGATCTCACGAGGGGTTTGGTGCCAGACATGAAATTTATCGTTATCACCAGTAACCCGGATAGTCCTCTAGCCGCCG
AGGCGAACGTATGCCTGTTGACCGGCGCTCCCAAGGAAGTTTGCCCGTTAGGCCTTACGCCGACTACCTCCACGACCGTC
ATGACGGTAATAGGCGATATCCTCGTGGTCGGAACCATGAAGCGTATCCATTTCACCAACAAGGATTACGCCAAGCGCCA
TCACGGGGGCTACTTAGGCTCCAAGAGCCGTGAGCTAAGCAAGAACGAATAA

Upstream 100 bases:

>100_bases
AGATAAATTGTCTGAAATAGATGATGCCAATATCAGTAAATATAAATACTTTCGCGATCGTTATTCAGGCAGGAATGCCG
TAAAACAATCAATCAACAAT

Downstream 100 bases:

>100_bases
CAAACCAGTATATAGTCATGAGAAAAGTCTTTGGTATAGGAGAAACCATCCTCGATATCATTTTCAGGAACGACCAACCA
CAGAAGGCCGTTCCCGGTGG

Product: putative sugar isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MVNENITSLLEQEAEAVRNIPVTPGYEEAVSLIVKHVHDLGGKLIMSGMGKAGQIALNIATTFSSTGTPAFFLHPSEAQH
GDLGIVCKNDIMLLISNSGKTRELVELVDLTRGLVPDMKFIVITSNPDSPLAAEANVCLLTGAPKEVCPLGLTPTTSTTV
MTVIGDILVVGTMKRIHFTNKDYAKRHHGGYLGSKSRELSKNE

Sequences:

>Translated_203_residues
MVNENITSLLEQEAEAVRNIPVTPGYEEAVSLIVKHVHDLGGKLIMSGMGKAGQIALNIATTFSSTGTPAFFLHPSEAQH
GDLGIVCKNDIMLLISNSGKTRELVELVDLTRGLVPDMKFIVITSNPDSPLAAEANVCLLTGAPKEVCPLGLTPTTSTTV
MTVIGDILVVGTMKRIHFTNKDYAKRHHGGYLGSKSRELSKNE
>Mature_203_residues
MVNENITSLLEQEAEAVRNIPVTPGYEEAVSLIVKHVHDLGGKLIMSGMGKAGQIALNIATTFSSTGTPAFFLHPSEAQH
GDLGIVCKNDIMLLISNSGKTRELVELVDLTRGLVPDMKFIVITSNPDSPLAAEANVCLLTGAPKEVCPLGLTPTTSTTV
MTVIGDILVVGTMKRIHFTNKDYAKRHHGGYLGSKSRELSKNE

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=155, Percent_Identity=49.0322580645161, Blast_Score=146, Evalue=9e-37,
Organism=Escherichia coli, GI87082151, Length=156, Percent_Identity=42.3076923076923, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 21751; Mature: 21751

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNENITSLLEQEAEAVRNIPVTPGYEEAVSLIVKHVHDLGGKLIMSGMGKAGQIALNIA
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEHHCCCCCCEEEEEEE
TTFSSTGTPAFFLHPSEAQHGDLGIVCKNDIMLLISNSGKTRELVELVDLTRGLVPDMKF
EEECCCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEE
IVITSNPDSPLAAEANVCLLTGAPKEVCPLGLTPTTSTTVMTVIGDILVVGTMKRIHFTN
EEEECCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECC
KDYAKRHHGGYLGSKSRELSKNE
CHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVNENITSLLEQEAEAVRNIPVTPGYEEAVSLIVKHVHDLGGKLIMSGMGKAGQIALNIA
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEHHCCCCCCEEEEEEE
TTFSSTGTPAFFLHPSEAQHGDLGIVCKNDIMLLISNSGKTRELVELVDLTRGLVPDMKF
EEECCCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEE
IVITSNPDSPLAAEANVCLLTGAPKEVCPLGLTPTTSTTVMTVIGDILVVGTMKRIHFTN
EEEECCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECC
KDYAKRHHGGYLGSKSRELSKNE
CHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]