Click here to switch to the map view.

The map label for this gene is yfbE [C]

Identifier: 150009376

GI number: 150009376

Start: 3320924

End: 3322030

Strand: Reverse

Name: yfbE [C]

Synonym: BDI_2784

Alternate gene names: 150009376

Gene position: 3322030-3320924 (Counterclockwise)

Preceding gene: 150009377

Following gene: 150009375

Centisome position: 69.05

GC content: 40.56

Gene sequence:

>1107_bases
ATGAATGATATAATAACGGTTACTTCTCCTTTGATTCCTCCTTTAGAGGAGTTTATCCCTTATTTGGAGGATATTTGGAG
ACGTAAATGGTTGACAAATAATGGGTATTATCATCAAGAATTGGAGAGAGCACTTTGTGAATATTTGAAGATTCCTTATA
TCAGTTTATTCACGAATGGTACTTTACCGTTGATATGCGCTTTGCAAGCGATGCGTATTACGGGGGAGGTTATAACTACA
CCTTATAGTTTCGTGGCGACTACGCATGCGCTTTGGTGGAATGGAATTAAACCGGTGTTTGTCGATGTTGATCCTATGAC
AGGAAATATGGATCCTGAAAAGATAGAGGCTGCAATAACTCCGAAAACAACAGCAATAATGCCTGTACATGTATATGGGC
AGCCTTGTGACGTGGATCGTATTAAGCAAATAGCAGACACTTATGGCTTGAAAATCATTTATGATGCTGCTCATGCCTTT
GGTGTAGAGAAAAATGGAGAGTCTGTTATTGCAGCTGGCGATATGGCTACATTGAGCTTTCATGCTACGAAGGTTTATAA
TACAATAGAAGGGGGGGCTTTGGTTTGTCATGATGCGGAGACAAAACAGCGCATTGATTACATTAAGAACTTTGGTTTCG
CTAATGAGACAACGGTAGTGGCTCCGGGTATCAATGGGAAAATGGATGAGGTACGTTCGGCTTATGGGCTGATGGCTCTG
AAACATGTAGATGTCGCTATAGAATCTCGAAAGCGAGTGGCGAGACGTTATAGGGAGGCGCTAAAGGAGGTCCCGGGCAT
TCATCTTTTTGAAGATAAAGAGGGGGTTAAGGCTAATTATTCTTATTTTCCTATATTTATAGATGAAAGGATGTATGGTA
TGAGTCGTGATACATTATATGAGAAGATGAAAAATGCAGGAGTTTATGGAAGACGTTATTTTTATCCGTTAATCAGTACG
TTCTCTACTTATCGGGGATTGGATTCAGCAGGAAAGGATAATTTACCAGAAGCGTATAAGATGGCTGAGCGGGTGATTTG
TTTGCCTATGCACCATGCTTTGAGTGAGGATGATGTAGAGCGAGTGATAGGTCAAATAATAGAGTAA

Upstream 100 bases:

>100_bases
ATCGAAGTGTCTTGATTAAACCTTATGATACTTATCCAAAGGATTGGATACAAGATGTATTGCTTAAAACAAAAAGAGTT
GTTTGTAAAATATTTTAGAT

Downstream 100 bases:

>100_bases
GATGTTTATGGATTCTTTTTATTCACGATCTGAATTAGAACATATAGGTTTTGCTACCATAGGCAAGAATGTACTGTTGA
GCCGTAAGGCTAGTATCTAT

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MNDIITVTSPLIPPLEEFIPYLEDIWRRKWLTNNGYYHQELERALCEYLKIPYISLFTNGTLPLICALQAMRITGEVITT
PYSFVATTHALWWNGIKPVFVDVDPMTGNMDPEKIEAAITPKTTAIMPVHVYGQPCDVDRIKQIADTYGLKIIYDAAHAF
GVEKNGESVIAAGDMATLSFHATKVYNTIEGGALVCHDAETKQRIDYIKNFGFANETTVVAPGINGKMDEVRSAYGLMAL
KHVDVAIESRKRVARRYREALKEVPGIHLFEDKEGVKANYSYFPIFIDERMYGMSRDTLYEKMKNAGVYGRRYFYPLIST
FSTYRGLDSAGKDNLPEAYKMAERVICLPMHHALSEDDVERVIGQIIE

Sequences:

>Translated_368_residues
MNDIITVTSPLIPPLEEFIPYLEDIWRRKWLTNNGYYHQELERALCEYLKIPYISLFTNGTLPLICALQAMRITGEVITT
PYSFVATTHALWWNGIKPVFVDVDPMTGNMDPEKIEAAITPKTTAIMPVHVYGQPCDVDRIKQIADTYGLKIIYDAAHAF
GVEKNGESVIAAGDMATLSFHATKVYNTIEGGALVCHDAETKQRIDYIKNFGFANETTVVAPGINGKMDEVRSAYGLMAL
KHVDVAIESRKRVARRYREALKEVPGIHLFEDKEGVKANYSYFPIFIDERMYGMSRDTLYEKMKNAGVYGRRYFYPLIST
FSTYRGLDSAGKDNLPEAYKMAERVICLPMHHALSEDDVERVIGQIIE
>Mature_368_residues
MNDIITVTSPLIPPLEEFIPYLEDIWRRKWLTNNGYYHQELERALCEYLKIPYISLFTNGTLPLICALQAMRITGEVITT
PYSFVATTHALWWNGIKPVFVDVDPMTGNMDPEKIEAAITPKTTAIMPVHVYGQPCDVDRIKQIADTYGLKIIYDAAHAF
GVEKNGESVIAAGDMATLSFHATKVYNTIEGGALVCHDAETKQRIDYIKNFGFANETTVVAPGINGKMDEVRSAYGLMAL
KHVDVAIESRKRVARRYREALKEVPGIHLFEDKEGVKANYSYFPIFIDERMYGMSRDTLYEKMKNAGVYGRRYFYPLIST
FSTYRGLDSAGKDNLPEAYKMAERVICLPMHHALSEDDVERVIGQIIE

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=375, Percent_Identity=29.8666666666667, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI2367285, Length=305, Percent_Identity=29.5081967213115, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41692; Mature: 41692

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDIITVTSPLIPPLEEFIPYLEDIWRRKWLTNNGYYHQELERALCEYLKIPYISLFTNG
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
TLPLICALQAMRITGEVITTPYSFVATTHALWWNGIKPVFVDVDPMTGNMDPEKIEAAIT
CHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEC
PKTTAIMPVHVYGQPCDVDRIKQIADTYGLKIIYDAAHAFGVEKNGESVIAAGDMATLSF
CCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEHHHHCCCCCCCCEEEEECCEEEEEE
HATKVYNTIEGGALVCHDAETKQRIDYIKNFGFANETTVVAPGINGKMDEVRSAYGLMAL
EHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
KHVDVAIESRKRVARRYREALKEVPGIHLFEDKEGVKANYSYFPIFIDERMYGMSRDTLY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCHHHCCCHHHHH
EKMKNAGVYGRRYFYPLISTFSTYRGLDSAGKDNLPEAYKMAERVICLPMHHALSEDDVE
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEEEHHHHCCHHHHH
RVIGQIIE
HHHHHHCC
>Mature Secondary Structure
MNDIITVTSPLIPPLEEFIPYLEDIWRRKWLTNNGYYHQELERALCEYLKIPYISLFTNG
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
TLPLICALQAMRITGEVITTPYSFVATTHALWWNGIKPVFVDVDPMTGNMDPEKIEAAIT
CHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEC
PKTTAIMPVHVYGQPCDVDRIKQIADTYGLKIIYDAAHAFGVEKNGESVIAAGDMATLSF
CCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEHHHHCCCCCCCCEEEEECCEEEEEE
HATKVYNTIEGGALVCHDAETKQRIDYIKNFGFANETTVVAPGINGKMDEVRSAYGLMAL
EHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
KHVDVAIESRKRVARRYREALKEVPGIHLFEDKEGVKANYSYFPIFIDERMYGMSRDTLY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCHHHCCCHHHHH
EKMKNAGVYGRRYFYPLISTFSTYRGLDSAGKDNLPEAYKMAERVICLPMHHALSEDDVE
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEEEHHHHCCHHHHH
RVIGQIIE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]