| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
Click here to switch to the map view.
The map label for this gene is recG [H]
Identifier: 150009297
GI number: 150009297
Start: 3206182
End: 3208278
Strand: Reverse
Name: recG [H]
Synonym: BDI_2699
Alternate gene names: 150009297
Gene position: 3208278-3206182 (Counterclockwise)
Preceding gene: 150009298
Following gene: 150009296
Centisome position: 66.68
GC content: 47.4
Gene sequence:
>2097_bases ATGCTGGACCTTGATAAGCGATCGATTACGTACTTGCCGGGAGTAGGACCCAAGAAGGCGGATATCCTGCAAAAGGAAGC GGGGATATCGTCGTATGAGGACTTGCTCTTTTATTTTCCTTATAAATATATAGATCGCAGCCGGTTTTATAAAGTAGCTG AGATCAGCGGGAATATGCCTTATATCCAGTTGAAAGGCCAGATTCTCTATTTCGATACGCTAGGCGAGGGGCGGAGTAAA CGGCTGGTTGGTAAGTTCTCGGATGGTACGGGCACGATCGATTTGGTCTGGTTCAAGGGCTTGAATTATGTGACGGATAA GTATCGTCCCAATACTGAGTATATAGTTTTCGGAAAGCCTACGGAGTTCGGGCATACCTATAACATACCGCATCCGGATA TCGACTCAATGGAGCAAGCTGATCAAGTGGCGAATGGCTTGACTCCTTTCTATAATACCTCGGAGAAAATGAAGAAATCT TTCTTGAATTCCCGGGCGATCCAGAACCTGCAATATACGTTGTTAAGCTGGCTGAACTGGGAACTTCCGGAGACGCTTTC CCCCGACGTATTGAAACGGATCCATATGATGTCTATGACAGAGGCGATGCGGAATATCCATTTCCCGGAATCTGCCGCTA AGTTGCGTGATGCCCAGTTACGTTTGAAGTTTGACGAGCTTTTCTTCATACAATTAAATATATTACGTACTGCTAGTGTT CGGAAACTGAAGCTAAAAGGGATCATATTCCCGACGGTCGGCCATTATTTCAATACGTTCTATAAAGAGTATCTTCCTTT TGAGTTGACGAACGCCCAGAAGCGGGTAGTCCGTGAGATCCGGATCGATATGGGTAGCGGGCGGCAAATGAATCGCCTGC TGCAAGGTGATGTGGGGAGTGGCAAGACTTTGGTAGGCTTATTGTCTATGCTATTGGCGATAGATAATCATTGCCAAGCT TGTATGATGGCTCCTACCGAGATCTTGGCGACCCAGCATTATGCGACGATCATGGGATTCCTGAAAGATATGGACGTGAA GGTCGCTCTTTTGACTGGATCTACCAAGAAGAAGGAGCGGGATAAGATATTACCGGCTATTGCCAGCGGTGAGATCCAGA TCGTGATCGGGACGCATGCGTTGATTGAGGAGACGGTGGTTTTCTCTTCGTTGGGATTAGCGATTATCGATGAGCAGCAC CGTTTTGGTGTGGAGCAACGCTCACGCCTTTGGATGAAGAACGCTATCGTGCCGCATGTGCTGGTGATGACGGCTACCCC GATTCCCCGTACTTTGGCGATGACTTTGTATGGGGATCTGGATGTATCGGTGATCGATGAGTTACCTCCGGGACGTAAAC CGATACAAACGCTTCATCGCTATGATAATAAAAAGGCGCAATTGTATGAGTTCCTTCGGAAAGAGATACAAAAGGGGCGT CAGGTTTATGTGGTATATCCGTTGATTGAAGGAAATGAGAAACTGGATTATAAAGACTTGGAGGCCGGTTTTGAGACGTT CAAGGAGGTTTTCCCTGAATATAAGGTATGTATGGTACATGGCCGTATGAAAGCGGCGGATAAGGATACCGAGATGCAGA AGTTTATCTCCGGCGAGGCGCAAATCTTGATGGCTACTACGGTTATAGAGGTTGGCGTGAACGTGCCGAACGCATCCGTC ATGGTGATCGAGAGTGCTGAACGTTTCGGCCTCTCTCAACTTCATCAGCTTCGTGGCCGGGTAGGACGTGGTGCTGAACA ATCCTATTGTATCTTGGTCTCATCCTATAAACTAAGTAATGATACTCGTAAGCGATTGGAGATTATGGTGAACAGTACGA ATGGCTTTGAGATCGCTGAGGCGGATCTCCGTCTCCGGGGACATGGAGATTTGGAAGGTACCCGACAAAGTGGCGAGGGG ATAGACCTTAAAATAGCGGACTTGGCGGCCGATGGACAAATACTTCAGTATGCGCGGGATATCGCTCAAGGAGTTCTTGA CGAAGACCCCGAATTATTGTCCGAACAGCACCGGATATTGAGCGAAAGGCTCAAAACTCTGTTCACAAGGAAGATAAATT GGGGAATGATTAGCTAA
Upstream 100 bases:
>100_bases GTTCCCGGTGATCGTGAGAATATCAAGATTACCACGCCCTTTGATTTGTTAATAGCGGAAGCGATGTTTGCCCGGTAAAC CCTAAAAACTCATAGACGTT
Downstream 100 bases:
>100_bases TATGTTGTGAAACATATTGTTCTGTAAGTCTTTGATATTTAGCTTGTTTATTCGCTTGTTTTGCTTTTATTCAAAGTCAT TGCAGAAATTTTTCGTTAAT
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MLDLDKRSITYLPGVGPKKADILQKEAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQILYFDTLGEGRSK RLVGKFSDGTGTIDLVWFKGLNYVTDKYRPNTEYIVFGKPTEFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKS FLNSRAIQNLQYTLLSWLNWELPETLSPDVLKRIHMMSMTEAMRNIHFPESAAKLRDAQLRLKFDELFFIQLNILRTASV RKLKLKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTLVGLLSMLLAIDNHCQA CMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQH RFGVEQRSRLWMKNAIVPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGR QVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILMATTVIEVGVNVPNASV MVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEG IDLKIADLAADGQILQYARDIAQGVLDEDPELLSEQHRILSERLKTLFTRKINWGMIS
Sequences:
>Translated_698_residues MLDLDKRSITYLPGVGPKKADILQKEAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQILYFDTLGEGRSK RLVGKFSDGTGTIDLVWFKGLNYVTDKYRPNTEYIVFGKPTEFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKS FLNSRAIQNLQYTLLSWLNWELPETLSPDVLKRIHMMSMTEAMRNIHFPESAAKLRDAQLRLKFDELFFIQLNILRTASV RKLKLKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTLVGLLSMLLAIDNHCQA CMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQH RFGVEQRSRLWMKNAIVPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGR QVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILMATTVIEVGVNVPNASV MVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEG IDLKIADLAADGQILQYARDIAQGVLDEDPELLSEQHRILSERLKTLFTRKINWGMIS >Mature_698_residues MLDLDKRSITYLPGVGPKKADILQKEAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQILYFDTLGEGRSK RLVGKFSDGTGTIDLVWFKGLNYVTDKYRPNTEYIVFGKPTEFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKS FLNSRAIQNLQYTLLSWLNWELPETLSPDVLKRIHMMSMTEAMRNIHFPESAAKLRDAQLRLKFDELFFIQLNILRTASV RKLKLKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTLVGLLSMLLAIDNHCQA CMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQH RFGVEQRSRLWMKNAIVPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGR QVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILMATTVIEVGVNVPNASV MVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEG IDLKIADLAADGQILQYARDIAQGVLDEDPELLSEQHRILSERLKTLFTRKINWGMIS
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=694, Percent_Identity=39.0489913544669, Blast_Score=434, Evalue=1e-122, Organism=Escherichia coli, GI1787357, Length=385, Percent_Identity=37.9220779220779, Blast_Score=265, Evalue=9e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 79396; Mature: 79396
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDLDKRSITYLPGVGPKKADILQKEAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMP CCCCCCCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCEEEEEECCCCC YIQLKGQILYFDTLGEGRSKRLVGKFSDGTGTIDLVWFKGLNYVTDKYRPNTEYIVFGKP EEEEECEEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCHHHCCCCCCCCEEEEECC TEFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNW CCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC ELPETLSPDVLKRIHMMSMTEAMRNIHFPESAAKLRDAQLRLKFDELFFIQLNILRTASV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHEEEEECEEEEEEEEEHHCCCE RKLKLKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGS EEEEEEEEEECHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC GKTLVGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKER CHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHH DKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNAIVPHV HHHCCEECCCCEEEEECCHHHHHHHHHHHHCCEEEECCHHHCCHHHHHHHHHHHCCCCEE LVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGR EEEECCCCCHHEEEEEECCCCHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC QVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEA EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCC QILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSN EEEEEEEEEECCCCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCC DTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARD CCCEEEEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH IAQGVLDEDPELLSEQHRILSERLKTLFTRKINWGMIS HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLDLDKRSITYLPGVGPKKADILQKEAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMP CCCCCCCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCEEEEEECCCCC YIQLKGQILYFDTLGEGRSKRLVGKFSDGTGTIDLVWFKGLNYVTDKYRPNTEYIVFGKP EEEEECEEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCHHHCCCCCCCCEEEEECC TEFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNW CCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC ELPETLSPDVLKRIHMMSMTEAMRNIHFPESAAKLRDAQLRLKFDELFFIQLNILRTASV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHEEEEECEEEEEEEEEHHCCCE RKLKLKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGS EEEEEEEEEECHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC GKTLVGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKER CHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHH DKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNAIVPHV HHHCCEECCCCEEEEECCHHHHHHHHHHHHCCEEEECCHHHCCHHHHHHHHHHHCCCCEE LVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGR EEEECCCCCHHEEEEEECCCCHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC QVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEA EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCC QILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSN EEEEEEEEEECCCCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCC DTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARD CCCEEEEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH IAQGVLDEDPELLSEQHRILSERLKTLFTRKINWGMIS HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]