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The map label for this gene is cydB [H]

Identifier: 150009247

GI number: 150009247

Start: 3130200

End: 3131351

Strand: Direct

Name: cydB [H]

Synonym: BDI_2649

Alternate gene names: 150009247

Gene position: 3130200-3131351 (Clockwise)

Preceding gene: 150009246

Following gene: 150009249

Centisome position: 65.06

GC content: 42.97

Gene sequence:

>1152_bases
ATGGATAGTACATATATATTGTTACAACATTACTGGTGGTTTCTGGTATCTCTACTGGGAGCGCTATTAGTATTCCTTCT
TTTTGTACAAGGAGGCCAATCTCTACTCTTCACTATCGGCAAGACGGAGATACAGCAAAAAATGTTATTGAACTCGACCG
GGCGTAAGTGGGAGTTTACTTTCACTACGTTGGTCACTTTCGGAGGTGCTTTCTTCGCCTCTTTCCCTTTATTTTATTCC
ACAAGCTTCGGCGGAGCCTATTGGGTATGGATGCTGATCTTGCTTTGCTTCGTGATACAAGCTGTATCTTACGAGTATCA
AGCGAAAAAAGGCAACCTACTCGGGAAAAAGACGTATCAAGTATTTCTTATGATCAATGGTATAGCAGGTCCGATCTTAC
TCGGAACCGCTGTAGCGACCTTCTTTAACGGCGCTGAATTTATTGTTAACAAAGAACAGTTGACTGATGTAGCCATGCCC
GTCATTTCCACGTGGGCCAATCCTTGGCATGGATTAGAGGCGGCTTTGGTATTTTGGAATTTGTGCCTAGGACTGGCAGT
TTTCTTCTTGGCACGAGCTCTGGCCCTACTCTATTTTATCAACAATATTGATGATCCGGAGATTGTCGCTAAAAGCCGGA
AACAATTGATACCGGAGACAATCTTGTTCCTCGTCTTTTTCTTGACATTCTTGATCCGTTTATTGTTGGTGGACGGTTTT
GCCGTAAATCCGGATACCGGAGAAGTATTTATGCAACCGTATAAGTATTTTATGAACCTGATCGAGATGCCAATCGTGTT
AGCCGTATTATTGATTGGCGTGGTTGGCGTGCTATTCGGCATAGGGAAAACGATATTCTCGAAGACTTGGAGAAAAGGCA
TCTGGTTCGCGGGAGCAGGGACTGTCTTGACCGTATTAGCTTTATTACTTTGCGCAGGATGGAATAATACGGCTTACTAC
CCATCTTTGGCGGATCTACAAAGTTCATTGACGATCCAGAATAGTTGCTCAAGCCCATTCACGTTGAAAGTAATGAGCTA
TGTATCTATTCTCGTCCCATTCGTATTAGCCTACATTTTCTATGCTTGGAGAGCGCTTGATCTACATAAGATCAATAGTA
AGGAAATGCAAGAAGGAGGTCATACCTATTAA

Upstream 100 bases:

>100_bases
GCAGAGATTGGAATCATGGTTAAGGCCATCAAGAAAGGGCCGGAAGCTGCCGCCCACTAATTTTCAATTTTCAAATATCA
ATTCTTAATTAGAAAGTCCT

Downstream 100 bases:

>100_bases
ATAATGTGCAAATTAAATAATATGCCAATGTGCCAATATGTCAATGTCCAGTGAGAATACAAGTGATAGTATCTTAATTG
ACAGATTAGCATATTGGCAT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MDSTYILLQHYWWFLVSLLGALLVFLLFVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFTTLVTFGGAFFASFPLFYS
TSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVFLMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMP
VISTWANPWHGLEAALVFWNLCLGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGF
AVNPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTVLTVLALLLCAGWNNTAYY
PSLADLQSSLTIQNSCSSPFTLKVMSYVSILVPFVLAYIFYAWRALDLHKINSKEMQEGGHTY

Sequences:

>Translated_383_residues
MDSTYILLQHYWWFLVSLLGALLVFLLFVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFTTLVTFGGAFFASFPLFYS
TSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVFLMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMP
VISTWANPWHGLEAALVFWNLCLGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGF
AVNPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTVLTVLALLLCAGWNNTAYY
PSLADLQSSLTIQNSCSSPFTLKVMSYVSILVPFVLAYIFYAWRALDLHKINSKEMQEGGHTY
>Mature_383_residues
MDSTYILLQHYWWFLVSLLGALLVFLLFVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFTTLVTFGGAFFASFPLFYS
TSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVFLMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMP
VISTWANPWHGLEAALVFWNLCLGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGF
AVNPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTVLTVLALLLCAGWNNTAYY
PSLADLQSSLTIQNSCSSPFTLKVMSYVSILVPFVLAYIFYAWRALDLHKINSKEMQEGGHTY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=391, Percent_Identity=24.5524296675192, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787213, Length=393, Percent_Identity=23.9185750636132, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 43046; Mature: 43046

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTYILLQHYWWFLVSLLGALLVFLLFVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFT
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEEEH
FTTLVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEE
VFLMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWN
EEEEEECCCHHHHHHHHHHHHHCCHHHEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LCLGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGF
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AVNPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHH
TVLTVLALLLCAGWNNTAYYPSLADLQSSLTIQNSCSSPFTLKVMSYVSILVPFVLAYIF
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
YAWRALDLHKINSKEMQEGGHTY
HHHHHHHHHHCCHHHHHCCCCCC
>Mature Secondary Structure
MDSTYILLQHYWWFLVSLLGALLVFLLFVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFT
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEEEH
FTTLVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEE
VFLMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWN
EEEEEECCCHHHHHHHHHHHHHCCHHHEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LCLGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGF
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AVNPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHH
TVLTVLALLLCAGWNNTAYYPSLADLQSSLTIQNSCSSPFTLKVMSYVSILVPFVLAYIF
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
YAWRALDLHKINSKEMQEGGHTY
HHHHHHHHHHCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]