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The map label for this gene is traI [C]

Identifier: 150009103

GI number: 150009103

Start: 2952379

End: 2953794

Strand: Direct

Name: traI [C]

Synonym: BDI_2504

Alternate gene names: 150009103

Gene position: 2952379-2953794 (Clockwise)

Preceding gene: 150009099

Following gene: 150009104

Centisome position: 61.36

GC content: 46.33

Gene sequence:

>1416_bases
ATGATAAATAGTTACATAAGCCAGCAAATCGAACGAAATTTCCCCTATAAACCGACGGATGATCAGTTTTTAGCGCTTCA
TACGCTTACCGAATTTCTCTTGTCTGAGGAACCGGACAGCCTTCTACTGATGAAAGGCTACGCAGGAACCGGAAAAACCT
CTCTGGTCGGGGCTTTGGTGAAAACGCTTAACGAACTAAAGCAAAAAACGTTTTTGTTGGCTCCAACCGGACGAGCAGCC
AAAGTTTTCTCGGGCTACGCTGGCCAAAAAGCGTATACAATTCATAAAAAAATATATCGCCAACGGGCGTTTTCCAATGA
GCCGACGGGCTTCATGCCGGCAGATAATTTACATAAAGATACACTTTTTATCGTCGACGAGGCTTCTATGATCGCCAACG
AGGGATTGGATTCATTTGTTTTTGGTTCCGGACGTCTGTTGGACGATTTAATCCAGTATGTCTATTCCGGGGAAAACTGC
CGTCTTATCCTAATGGGAGATGTCGCACAGCTTCCTCCGGTGATGCAAACGGAGAGTCCCGCCTTGAATCCCGAGATATT
ACGGGGTTACAACCTACAGGTTTGGGAGATAGCGTTAACTCAAGTCGTACGCCAAAGCGAAGACTCGGGAATCCTGTTCA
ACGCGACCCGGCTACGAGACGCACTACGAAACCACACGGTCGAGATCTTTCCGAAATTACAATTAAAAGGCTTCTCCGAT
TTCACGAAAGTCAATGGAGATGAGCTAATTGAGGAAATATCTTCCGCCTATAGCCGCGACGGTATGGAAGAGACAATGAT
TATCTCCCGCTCGAATAAACGAGCCACGATTTATAATAACGGCATACGTAACCGTATCCTATACAGGGAAGAAGAGCTAT
CGTCCGGCGATCGTTTAATGGTAGCGAAGAACAATTATTATTGGACAGCGAATTGCAAGGAGATGGACTTTATAGCGAAC
GGAGAGATCATTCAAGTCATGCGGGTACGCCGTGTCACGGAGATGTATGGCTTCCGCTTTGCCGACATCACGGCTCGTTT
TCAAGATTATGATCTGGAAATCGATTTGAAAATCCTATTGGATACTTTACAGACCGACTCCCCCGCCCTCCCTAAGGAGC
TAAACGACAAGCTCTTTTACACCATATTGGAAGATTACGAGGACATTCCTACCAAGGCGGGAAAAATGAAAAAGATGAAG
GTAGATCCTCATTACAACGTCGTCCAAGTAAAATACGCTTATGCGGTAACCTGCCATAAAGCCCAAGGCGGCCAATGGAT
GAACGTCTTTCTCGATATCGGTTACATCACGGAGGAAATGCTTGGTGAGGATTTCTATCGGTGGCTCTACACGGCTTTTA
CCCGGGCGACCCATCACCTATATCTGGTGAATTTACCGGACGAGTTCGTCGAATGA

Upstream 100 bases:

>100_bases
CTTTCATGGTTTGTATTGTTTTTTGAATTTATTTCGTTCGGCAAATTTAAAAAAGAATATTTAATACACTACCTTTATCG
CGAAAATTATTGCGATCAAA

Downstream 100 bases:

>100_bases
TTTACAATATTTTAAGATCGAAACTGGCAACATTGACAAGAAATACTTATTTTTGTTGCAAAACATACGTATGTCCGGAT
GATTTATAGCATCTGAAAAA

Product: exonuclease V subunit alpha

Products: NA

Alternate protein names: Exonuclease V Subunit Alpha; Helicase RecD/TraA Family; ATP-Dependent ExoDNAse; Exodeoxyribonuclease V; RecD/TraA Family Helicase; ATP-Dependent Exodeoxyribonuclease; RecD-Like Exodeoxyribonuclease; ATP-Dependent Exodnase; Helicase RecD/TraA; ATP-Dependent ExoDNAse Alpha Subunit; DNA Helicase; Deoxyribonuclease; Helicase Family Protein; Exodeoxyribonuclease V Alpha Subunit; ATP-Dependent ExoDNAse Subunit Alpha; Ribonuclease H; AAA ATPase

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MINSYISQQIERNFPYKPTDDQFLALHTLTEFLLSEEPDSLLLMKGYAGTGKTSLVGALVKTLNELKQKTFLLAPTGRAA
KVFSGYAGQKAYTIHKKIYRQRAFSNEPTGFMPADNLHKDTLFIVDEASMIANEGLDSFVFGSGRLLDDLIQYVYSGENC
RLILMGDVAQLPPVMQTESPALNPEILRGYNLQVWEIALTQVVRQSEDSGILFNATRLRDALRNHTVEIFPKLQLKGFSD
FTKVNGDELIEEISSAYSRDGMEETMIISRSNKRATIYNNGIRNRILYREEELSSGDRLMVAKNNYYWTANCKEMDFIAN
GEIIQVMRVRRVTEMYGFRFADITARFQDYDLEIDLKILLDTLQTDSPALPKELNDKLFYTILEDYEDIPTKAGKMKKMK
VDPHYNVVQVKYAYAVTCHKAQGGQWMNVFLDIGYITEEMLGEDFYRWLYTAFTRATHHLYLVNLPDEFVE

Sequences:

>Translated_471_residues
MINSYISQQIERNFPYKPTDDQFLALHTLTEFLLSEEPDSLLLMKGYAGTGKTSLVGALVKTLNELKQKTFLLAPTGRAA
KVFSGYAGQKAYTIHKKIYRQRAFSNEPTGFMPADNLHKDTLFIVDEASMIANEGLDSFVFGSGRLLDDLIQYVYSGENC
RLILMGDVAQLPPVMQTESPALNPEILRGYNLQVWEIALTQVVRQSEDSGILFNATRLRDALRNHTVEIFPKLQLKGFSD
FTKVNGDELIEEISSAYSRDGMEETMIISRSNKRATIYNNGIRNRILYREEELSSGDRLMVAKNNYYWTANCKEMDFIAN
GEIIQVMRVRRVTEMYGFRFADITARFQDYDLEIDLKILLDTLQTDSPALPKELNDKLFYTILEDYEDIPTKAGKMKKMK
VDPHYNVVQVKYAYAVTCHKAQGGQWMNVFLDIGYITEEMLGEDFYRWLYTAFTRATHHLYLVNLPDEFVE
>Mature_471_residues
MINSYISQQIERNFPYKPTDDQFLALHTLTEFLLSEEPDSLLLMKGYAGTGKTSLVGALVKTLNELKQKTFLLAPTGRAA
KVFSGYAGQKAYTIHKKIYRQRAFSNEPTGFMPADNLHKDTLFIVDEASMIANEGLDSFVFGSGRLLDDLIQYVYSGENC
RLILMGDVAQLPPVMQTESPALNPEILRGYNLQVWEIALTQVVRQSEDSGILFNATRLRDALRNHTVEIFPKLQLKGFSD
FTKVNGDELIEEISSAYSRDGMEETMIISRSNKRATIYNNGIRNRILYREEELSSGDRLMVAKNNYYWTANCKEMDFIAN
GEIIQVMRVRRVTEMYGFRFADITARFQDYDLEIDLKILLDTLQTDSPALPKELNDKLFYTILEDYEDIPTKAGKMKKMK
VDPHYNVVQVKYAYAVTCHKAQGGQWMNVFLDIGYITEEMLGEDFYRWLYTAFTRATHHLYLVNLPDEFVE

Specific function: traI Has Been Identified As DNA Helicase I And It Also Has An Additional Activity Of Site-Specific Nicking At Orit. DNA Helicase I Is A Potent DNA-Dependent ATPase. [C]

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 54092; Mature: 54092

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSYISQQIERNFPYKPTDDQFLALHTLTEFLLSEEPDSLLLMKGYAGTGKTSLVGALV
CCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
KTLNELKQKTFLLAPTGRAAKVFSGYAGQKAYTIHKKIYRQRAFSNEPTGFMPADNLHKD
HHHHHHHHCEEEEECCCCHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TLFIVDEASMIANEGLDSFVFGSGRLLDDLIQYVYSGENCRLILMGDVAQLPPVMQTESP
EEEEEECHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCC
ALNPEILRGYNLQVWEIALTQVVRQSEDSGILFNATRLRDALRNHTVEIFPKLQLKGFSD
CCCHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEEEEEEECCCCH
FTKVNGDELIEEISSAYSRDGMEETMIISRSNKRATIYNNGIRNRILYREEELSSGDRLM
HHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCHHHHEEEHHHCCCCCEEE
VAKNNYYWTANCKEMDFIANGEIIQVMRVRRVTEMYGFRFADITARFQDYDLEIDLKILL
EEECCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCEEEHEEEEEECCCCEEEHHHHH
DTLQTDSPALPKELNDKLFYTILEDYEDIPTKAGKMKKMKVDPHYNVVQVKYAYAVTCHK
HHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEE
AQGGQWMNVFLDIGYITEEMLGEDFYRWLYTAFTRATHHLYLVNLPDEFVE
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCC
>Mature Secondary Structure
MINSYISQQIERNFPYKPTDDQFLALHTLTEFLLSEEPDSLLLMKGYAGTGKTSLVGALV
CCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
KTLNELKQKTFLLAPTGRAAKVFSGYAGQKAYTIHKKIYRQRAFSNEPTGFMPADNLHKD
HHHHHHHHCEEEEECCCCHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TLFIVDEASMIANEGLDSFVFGSGRLLDDLIQYVYSGENCRLILMGDVAQLPPVMQTESP
EEEEEECHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCC
ALNPEILRGYNLQVWEIALTQVVRQSEDSGILFNATRLRDALRNHTVEIFPKLQLKGFSD
CCCHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEEEEEEECCCCH
FTKVNGDELIEEISSAYSRDGMEETMIISRSNKRATIYNNGIRNRILYREEELSSGDRLM
HHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCHHHHEEEHHHCCCCCEEE
VAKNNYYWTANCKEMDFIANGEIIQVMRVRRVTEMYGFRFADITARFQDYDLEIDLKILL
EEECCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCEEEHEEEEEECCCCEEEHHHHH
DTLQTDSPALPKELNDKLFYTILEDYEDIPTKAGKMKKMKVDPHYNVVQVKYAYAVTCHK
HHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEE
AQGGQWMNVFLDIGYITEEMLGEDFYRWLYTAFTRATHHLYLVNLPDEFVE
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA