| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150009077
Identifier: 150009077
GI number: 150009077
Start: 2919107
End: 2921977
Strand: Direct
Name: 150009077
Synonym: BDI_2478
Alternate gene names: NA
Gene position: 2919107-2921977 (Clockwise)
Preceding gene: 150009076
Following gene: 150009078
Centisome position: 60.67
GC content: 46.39
Gene sequence:
>2871_bases ATGAACCATGTCTATCTTTTCGTAATTGTAAACAATGTAATCCATATAGTTATGAAATCGGGAAAGTGCCTTTTGATGTT GTTGATGATCCTTTTTTCACCGATGGCTTTCGCACAGCAAAGCGGTGTTAATGTTACCGGATCTGTCGTTGAGCAAGGTA GTGATACCCCCATCGAGCAAGCAACGGTACGATTGCTGAACGTAAAAGACAGTGCCATGGTACGAGGTGTGGTGAGCGCC CGTAATGGTAGTTTTACCTTGAAAAACGTAAAGAAAGGAAGTTATTTACTACACATCACATTCATCGGATACGATCCATT GTACCAACCCTTGCAAATCACCGGAAAGAAAAACCCCGTAAACGTAGGTAAACTTGAATTAAGCGACGGAGCGATCGAGT TGGGAGAAGCCGTAGTTATAGGTAAGGCACCCGAGGTTACCGTTCGCAACGACACTGTGGAATACAACGCGGATTCTTAT AAAGTAACCGAAGGCTCCGTTTTGGAGGATTTATTGAAAAAGATGCCCGGTGTGGAGGTAGATAGCGAAGGCAAGATCAC CGTCAATGGAAAAGAGGTGAAAAAGGTAATGGTGGACGGAAAGGAGTTCTTCTCCGATGACCCGAAAGTGGCCTCCAAGA ATCTTCCAGCCAAGATGATCGATAAATTACAGGTACTTGATAAGAAAAGCGATATGGCCCAAATGACCGGCTTCGACGAT GGAGAGGAAGAGACCGTCATCAACCTAACCGTGAAACCCGGCATGAAGCAAGGTTGGTTTGGCAACGCATATGGTGGATA CGGAAGTAAAGATCGGTATGAAGGCAACGCCATGGTCAATCGTTTCGTGAATAATGACCAGATCACGTTCATGGGGGGAG CGAATAACACGAATAATATGGGCTTTTCCGATCTAGCCTCAACAATGTTCTCCGGTATGGGAGGCGGTGGAGGCCGACGA GGAGGTTTCGGAGCGGGTAGCGGTATCACCTCTTCCGGAAACGCAGGTTTGAACTTCAGCAAGGAATTCAAGCCGGATAA ACTAACTCTTGGGGGAAATACTCGTTATTCCCATTCCGACAATGATGCTCGCAGCAAGAGTGATCGGCAGAATATCCTTC CCGGAGATAGTTCCTCCTATGATAATAGCGAGGCGATGAGCCGTACGAAGAGCGATAACTTTGGCGTAGACTTTCGCTTG GAATGGAAACCGGATACGATGACTCAACTTATCTTCCGCCCGAGTTTCAGCTTCAGCCACAGCATGAACGACAATTTCAG TGATGCTACCACCTTGGATAACGAACGGGATACGGTCAATACCAACAAATCCAGTAATTACTCGGAAAGTAACGGGTACA ACCTAAATGCCAGCATCGATTTCAGCCGTAAGCTGAATAACAAAGGACGTGTGTTCAGCGCCACCCTTTCTGGAGGCAAT AGCGATTCGTACAGTGACGGCATGAACCGTTCCGACATCGTTTATTTCAACCAGACTGATGCCTTGAAGAATAGCATTAT CGACCAGCGCTCACGTTACGACAACAAAGGTTTCAATTACCGGGCCTACGTATCGTGGGTAGAACCGATCGGGCATAATA ATTTCATCCAAGCCACTTATAGCATCAGCCAACGGAAACAAGAAGCCTTGAAGAATGTTTACAACCAAGACGCTGATGGT ATATATAATGTATTAGATTCCGCCTACAGCCAAAGCTATCGCAATAACTTTATCAGCCAGCGGGCCAGCTTGAGCTTCAA GTCTCAACGGGCAAAGTTCAACTACACGATCGGCTTGAATCTGGACCCATCCTATTCCAGCAGCGAGAATTTCGTTGGCG ACACGACCTTATCCAAGATAACCCGTAAGGTGGTCAACCTCTCCCCGATGGCTCAATTCAACTATATGTTCGATAAGCGT ACGAATCTTCGTATCATGTATAATGGCCGTACCAGCCAACCGAGCATGACTCAATTACAACCGGTAGCGGATATCTCGGA CCCGACGAATATCACGATCGGTAACCCGGATTTGAATCCCCGCTATACGAACAACGTATTTATTCGTTTCCAACAGTTCA CACCGGAGAAACAACGGGCCTTTATGATCATGGCAAACGGTAGTTATATCATCAACGATATCGTAAGTTATACCTCTTAT AACCAAGAGACAGGTGTAAAGACCACCACTTACAAAAACGTAAATGGCAACTATAGTGGCAACGTCCGTATGATGTTGAA TACCCCCTTGAAGAATAAGAAATTCTCCATCAACTCCATGACAATGGCCTCGTTCGCTAATAGCAACGGATATATCAACG AGGAGAAGAATACGAACCGGAATCTCATATTGTCCGAACGTGGTGGTATCGACTTCCGCTCCTCTTATCTGGATCTGGGC GTAAACGGGAATATTCGTTACAATGCCACCAGCAACTCCCTGCAAAAGGAAAATAACCAAAACACCTTCAATTACGGAGC CGGCGGTTACACGACAATCTATCTGCCCCTCAATTTCAAGATAGAGAGTGACGTGAACTGGTCTACCAACTCTGGCTACG GGGACGGATTCAAACAGAACGAAGTCCTATGGAATGCCTCAGCCTCCAAGTCTTTCTTAAAGAATAACCAAGGGACGCTC CGTTTCAAGATCTACGATATCCTGCAACAACGAAGCAATATCTCCCGTTCCATTACCGCTAGCTATATACAAGACTCAGA ATATAACACGCTAGGCAGTTATTTCATGGTACACTTCATCTATCGGTTCAGCATCTTCAAAGGCGGAGCCAGTGCCAGCG ACGTGAAAACGCCGGGTAGAAGCGGACGGGGAAGAGGTCCGATGGGTCCTCCTCCGGGACATCGATTTTAA
Upstream 100 bases:
>100_bases TTTATAATGTTCTTGTTCTAAGAATACTCTCCATAAATCCAAAGGCCTGCACGATTGTTAATAATATCAAATCCATAAAA GTTATATTAAACTATTTTGA
Downstream 100 bases:
>100_bases TCCCCTAAGTGGAGACTTTATAAAGTCCGTACGCAACAAAAAACGCACCGGACTTGTTTTTACTTAGGATAATATATAAA AAACTTAGGATAAAATAACG
Product: hypothetical protein
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor Plug; Nb-Dependent Receptor; NB Dependent/Ligand-Gated Channel; NB Dependent Receptor; NB-Dependent Receptor Domain-Containing Protein; NB-Dependent Receptor Exported Protein; NB-Dependent Receptor Plug Domain Protein; Carboxypeptidase-Like Regulatory Region; Outer Membrane Receptor Family Transporter
Number of amino acids: Translated: 956; Mature: 956
Protein sequence:
>956_residues MNHVYLFVIVNNVIHIVMKSGKCLLMLLMILFSPMAFAQQSGVNVTGSVVEQGSDTPIEQATVRLLNVKDSAMVRGVVSA RNGSFTLKNVKKGSYLLHITFIGYDPLYQPLQITGKKNPVNVGKLELSDGAIELGEAVVIGKAPEVTVRNDTVEYNADSY KVTEGSVLEDLLKKMPGVEVDSEGKITVNGKEVKKVMVDGKEFFSDDPKVASKNLPAKMIDKLQVLDKKSDMAQMTGFDD GEEETVINLTVKPGMKQGWFGNAYGGYGSKDRYEGNAMVNRFVNNDQITFMGGANNTNNMGFSDLASTMFSGMGGGGGRR GGFGAGSGITSSGNAGLNFSKEFKPDKLTLGGNTRYSHSDNDARSKSDRQNILPGDSSSYDNSEAMSRTKSDNFGVDFRL EWKPDTMTQLIFRPSFSFSHSMNDNFSDATTLDNERDTVNTNKSSNYSESNGYNLNASIDFSRKLNNKGRVFSATLSGGN SDSYSDGMNRSDIVYFNQTDALKNSIIDQRSRYDNKGFNYRAYVSWVEPIGHNNFIQATYSISQRKQEALKNVYNQDADG IYNVLDSAYSQSYRNNFISQRASLSFKSQRAKFNYTIGLNLDPSYSSSENFVGDTTLSKITRKVVNLSPMAQFNYMFDKR TNLRIMYNGRTSQPSMTQLQPVADISDPTNITIGNPDLNPRYTNNVFIRFQQFTPEKQRAFMIMANGSYIINDIVSYTSY NQETGVKTTTYKNVNGNYSGNVRMMLNTPLKNKKFSINSMTMASFANSNGYINEEKNTNRNLILSERGGIDFRSSYLDLG VNGNIRYNATSNSLQKENNQNTFNYGAGGYTTIYLPLNFKIESDVNWSTNSGYGDGFKQNEVLWNASASKSFLKNNQGTL RFKIYDILQQRSNISRSITASYIQDSEYNTLGSYFMVHFIYRFSIFKGGASASDVKTPGRSGRGRGPMGPPPGHRF
Sequences:
>Translated_956_residues MNHVYLFVIVNNVIHIVMKSGKCLLMLLMILFSPMAFAQQSGVNVTGSVVEQGSDTPIEQATVRLLNVKDSAMVRGVVSA RNGSFTLKNVKKGSYLLHITFIGYDPLYQPLQITGKKNPVNVGKLELSDGAIELGEAVVIGKAPEVTVRNDTVEYNADSY KVTEGSVLEDLLKKMPGVEVDSEGKITVNGKEVKKVMVDGKEFFSDDPKVASKNLPAKMIDKLQVLDKKSDMAQMTGFDD GEEETVINLTVKPGMKQGWFGNAYGGYGSKDRYEGNAMVNRFVNNDQITFMGGANNTNNMGFSDLASTMFSGMGGGGGRR GGFGAGSGITSSGNAGLNFSKEFKPDKLTLGGNTRYSHSDNDARSKSDRQNILPGDSSSYDNSEAMSRTKSDNFGVDFRL EWKPDTMTQLIFRPSFSFSHSMNDNFSDATTLDNERDTVNTNKSSNYSESNGYNLNASIDFSRKLNNKGRVFSATLSGGN SDSYSDGMNRSDIVYFNQTDALKNSIIDQRSRYDNKGFNYRAYVSWVEPIGHNNFIQATYSISQRKQEALKNVYNQDADG IYNVLDSAYSQSYRNNFISQRASLSFKSQRAKFNYTIGLNLDPSYSSSENFVGDTTLSKITRKVVNLSPMAQFNYMFDKR TNLRIMYNGRTSQPSMTQLQPVADISDPTNITIGNPDLNPRYTNNVFIRFQQFTPEKQRAFMIMANGSYIINDIVSYTSY NQETGVKTTTYKNVNGNYSGNVRMMLNTPLKNKKFSINSMTMASFANSNGYINEEKNTNRNLILSERGGIDFRSSYLDLG VNGNIRYNATSNSLQKENNQNTFNYGAGGYTTIYLPLNFKIESDVNWSTNSGYGDGFKQNEVLWNASASKSFLKNNQGTL RFKIYDILQQRSNISRSITASYIQDSEYNTLGSYFMVHFIYRFSIFKGGASASDVKTPGRSGRGRGPMGPPPGHRF >Mature_956_residues MNHVYLFVIVNNVIHIVMKSGKCLLMLLMILFSPMAFAQQSGVNVTGSVVEQGSDTPIEQATVRLLNVKDSAMVRGVVSA RNGSFTLKNVKKGSYLLHITFIGYDPLYQPLQITGKKNPVNVGKLELSDGAIELGEAVVIGKAPEVTVRNDTVEYNADSY KVTEGSVLEDLLKKMPGVEVDSEGKITVNGKEVKKVMVDGKEFFSDDPKVASKNLPAKMIDKLQVLDKKSDMAQMTGFDD GEEETVINLTVKPGMKQGWFGNAYGGYGSKDRYEGNAMVNRFVNNDQITFMGGANNTNNMGFSDLASTMFSGMGGGGGRR GGFGAGSGITSSGNAGLNFSKEFKPDKLTLGGNTRYSHSDNDARSKSDRQNILPGDSSSYDNSEAMSRTKSDNFGVDFRL EWKPDTMTQLIFRPSFSFSHSMNDNFSDATTLDNERDTVNTNKSSNYSESNGYNLNASIDFSRKLNNKGRVFSATLSGGN SDSYSDGMNRSDIVYFNQTDALKNSIIDQRSRYDNKGFNYRAYVSWVEPIGHNNFIQATYSISQRKQEALKNVYNQDADG IYNVLDSAYSQSYRNNFISQRASLSFKSQRAKFNYTIGLNLDPSYSSSENFVGDTTLSKITRKVVNLSPMAQFNYMFDKR TNLRIMYNGRTSQPSMTQLQPVADISDPTNITIGNPDLNPRYTNNVFIRFQQFTPEKQRAFMIMANGSYIINDIVSYTSY NQETGVKTTTYKNVNGNYSGNVRMMLNTPLKNKKFSINSMTMASFANSNGYINEEKNTNRNLILSERGGIDFRSSYLDLG VNGNIRYNATSNSLQKENNQNTFNYGAGGYTTIYLPLNFKIESDVNWSTNSGYGDGFKQNEVLWNASASKSFLKNNQGTL RFKIYDILQQRSNISRSITASYIQDSEYNTLGSYFMVHFIYRFSIFKGGASASDVKTPGRSGRGRGPMGPPPGHRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 106233; Mature: 106233
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHVYLFVIVNNVIHIVMKSGKCLLMLLMILFSPMAFAQQSGVNVTGSVVEQGSDTPIEQ CCEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCEEHHHHHCCCCCCHHH ATVRLLNVKDSAMVRGVVSARNGSFTLKNVKKGSYLLHITFIGYDPLYQPLQITGKKNPV HEEEEEECCCHHHHHHHEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCC NVGKLELSDGAIELGEAVVIGKAPEVTVRNDTVEYNADSYKVTEGSVLEDLLKKMPGVEV CEEEEEECCCCEECCCEEEECCCCCEEEECCEEEECCCCEEECCCHHHHHHHHHCCCCEE DSEGKITVNGKEVKKVMVDGKEFFSDDPKVASKNLPAKMIDKLQVLDKKSDMAQMTGFDD CCCCEEEECHHHHHHHHHCCHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCC GEEETVINLTVKPGMKQGWFGNAYGGYGSKDRYEGNAMVNRFVNNDQITFMGGANNTNNM CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCC GFSDLASTMFSGMGGGGGRRGGFGAGSGITSSGNAGLNFSKEFKPDKLTLGGNTRYSHSD CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC NDARSKSDRQNILPGDSSSYDNSEAMSRTKSDNFGVDFRLEWKPDTMTQLIFRPSFSFSH CCHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCHHHHEEECCCCCCCC SMNDNFSDATTLDNERDTVNTNKSSNYSESNGYNLNASIDFSRKLNNKGRVFSATLSGGN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCEEEEEECCCC SDSYSDGMNRSDIVYFNQTDALKNSIIDQRSRYDNKGFNYRAYVSWVEPIGHNNFIQATY CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEH SISQRKQEALKNVYNQDADGIYNVLDSAYSQSYRNNFISQRASLSFKSQRAKFNYTIGLN HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE LDPSYSSSENFVGDTTLSKITRKVVNLSPMAQFNYMFDKRTNLRIMYNGRTSQPSMTQLQ CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCEEEEECCCCCCCCHHHCC PVADISDPTNITIGNPDLNPRYTNNVFIRFQQFTPEKQRAFMIMANGSYIINDIVSYTSY CCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCC NQETGVKTTTYKNVNGNYSGNVRMMLNTPLKNKKFSINSMTMASFANSNGYINEEKNTNR CCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCEEEEEECCCCCEECCCCCCCC NLILSERGGIDFRSSYLDLGVNGNIRYNATSNSLQKENNQNTFNYGAGGYTTIYLPLNFK CEEEECCCCCCEECCEEEECCCCCEEECCCCCHHHHCCCCCCEEECCCCEEEEEEEEEEE IESDVNWSTNSGYGDGFKQNEVLWNASASKSFLKNNQGTLRFKIYDILQQRSNISRSITA ECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHH SYIQDSEYNTLGSYFMVHFIYRFSIFKGGASASDVKTPGRSGRGRGPMGPPPGHRF HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNHVYLFVIVNNVIHIVMKSGKCLLMLLMILFSPMAFAQQSGVNVTGSVVEQGSDTPIEQ CCEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCEEHHHHHCCCCCCHHH ATVRLLNVKDSAMVRGVVSARNGSFTLKNVKKGSYLLHITFIGYDPLYQPLQITGKKNPV HEEEEEECCCHHHHHHHEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCC NVGKLELSDGAIELGEAVVIGKAPEVTVRNDTVEYNADSYKVTEGSVLEDLLKKMPGVEV CEEEEEECCCCEECCCEEEECCCCCEEEECCEEEECCCCEEECCCHHHHHHHHHCCCCEE DSEGKITVNGKEVKKVMVDGKEFFSDDPKVASKNLPAKMIDKLQVLDKKSDMAQMTGFDD CCCCEEEECHHHHHHHHHCCHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCC GEEETVINLTVKPGMKQGWFGNAYGGYGSKDRYEGNAMVNRFVNNDQITFMGGANNTNNM CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCC GFSDLASTMFSGMGGGGGRRGGFGAGSGITSSGNAGLNFSKEFKPDKLTLGGNTRYSHSD CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC NDARSKSDRQNILPGDSSSYDNSEAMSRTKSDNFGVDFRLEWKPDTMTQLIFRPSFSFSH CCHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCHHHHEEECCCCCCCC SMNDNFSDATTLDNERDTVNTNKSSNYSESNGYNLNASIDFSRKLNNKGRVFSATLSGGN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCEEEEEECCCC SDSYSDGMNRSDIVYFNQTDALKNSIIDQRSRYDNKGFNYRAYVSWVEPIGHNNFIQATY CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEH SISQRKQEALKNVYNQDADGIYNVLDSAYSQSYRNNFISQRASLSFKSQRAKFNYTIGLN HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE LDPSYSSSENFVGDTTLSKITRKVVNLSPMAQFNYMFDKRTNLRIMYNGRTSQPSMTQLQ CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCEEEEECCCCCCCCHHHCC PVADISDPTNITIGNPDLNPRYTNNVFIRFQQFTPEKQRAFMIMANGSYIINDIVSYTSY CCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCC NQETGVKTTTYKNVNGNYSGNVRMMLNTPLKNKKFSINSMTMASFANSNGYINEEKNTNR CCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCEEEEEECCCCCEECCCCCCCC NLILSERGGIDFRSSYLDLGVNGNIRYNATSNSLQKENNQNTFNYGAGGYTTIYLPLNFK CEEEECCCCCCEECCEEEECCCCCEEECCCCCHHHHCCCCCCEEECCCCEEEEEEEEEEE IESDVNWSTNSGYGDGFKQNEVLWNASASKSFLKNNQGTLRFKIYDILQQRSNISRSITA ECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHH SYIQDSEYNTLGSYFMVHFIYRFSIFKGGASASDVKTPGRSGRGRGPMGPPPGHRF HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA