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The map label for this gene is rpoE [C]

Identifier: 150009076

GI number: 150009076

Start: 2918476

End: 2919027

Strand: Direct

Name: rpoE [C]

Synonym: BDI_2477

Alternate gene names: 150009076

Gene position: 2918476-2919027 (Clockwise)

Preceding gene: 150009062

Following gene: 150009077

Centisome position: 60.66

GC content: 36.23

Gene sequence:

>552_bases
ATGGATGATTCTACTTTAATTGAACAAATACAATTAGGAAGTAAAGACGCTTTTAAACAGATGTTTATCAAATTTTATTC
GCCGCTATGCGAATATGCTTCCCAATATGTTTCTGATGAGGATGCCGAAGAACTTATTCAGGAGCTAATGTTATTTATAT
GGGAAAACCGAAATTCCTTATTTGTAGAGATATCCCTAAAATCCTATCTTTTTATGGCTGTTAAGCATCGTTGCCTCAAT
GCGATCAAAAGGCAATTGTATCATGAGCGAGTACATAGCCTGATTTATGATAAGATTAAAGATCAATTTGAGAATCCTGA
TACCTATTTCGTAAACGAGCTTACAGAGAATATCACGAAAGCGATCGAAGAATTGCCTGAGAATTACCGGGAGACATTTA
AACTTAGCCGATTCGGAGAGCAATCTAATCCCCAAATCGCAGAGGCCTTGGGGGTTTCTATCAAAACCGTGGAATACCGG
ATTACACAATCCTTGAAAATATTGCGGGTTAAATTGAAGGACTATTTACCTTTTATAATGTTCTTGTTCTAA

Upstream 100 bases:

>100_bases
CTAAAAGTGATATTTCGATGCGGTTACCCTAATTTTAATCTTGAATATCCAAGATAAAATATATCTTTGCTTACAGAAAA
GAAAGGATGAAGAAGGTGCT

Downstream 100 bases:

>100_bases
GAATACTCTCCATAAATCCAAAGGCCTGCACGATTGTTAATAATATCAAATCCATAAAAGTTATATTAAACTATTTTGAA
TGAACCATGTCTATCTTTTC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase; ECF Sigma Factor; Xin-Antitoxin System Toxin Component HipA Family; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDDSTLIEQIQLGSKDAFKQMFIKFYSPLCEYASQYVSDEDAEELIQELMLFIWENRNSLFVEISLKSYLFMAVKHRCLN
AIKRQLYHERVHSLIYDKIKDQFENPDTYFVNELTENITKAIEELPENYRETFKLSRFGEQSNPQIAEALGVSIKTVEYR
ITQSLKILRVKLKDYLPFIMFLF

Sequences:

>Translated_183_residues
MDDSTLIEQIQLGSKDAFKQMFIKFYSPLCEYASQYVSDEDAEELIQELMLFIWENRNSLFVEISLKSYLFMAVKHRCLN
AIKRQLYHERVHSLIYDKIKDQFENPDTYFVNELTENITKAIEELPENYRETFKLSRFGEQSNPQIAEALGVSIKTVEYR
ITQSLKILRVKLKDYLPFIMFLF
>Mature_183_residues
MDDSTLIEQIQLGSKDAFKQMFIKFYSPLCEYASQYVSDEDAEELIQELMLFIWENRNSLFVEISLKSYLFMAVKHRCLN
AIKRQLYHERVHSLIYDKIKDQFENPDTYFVNELTENITKAIEELPENYRETFKLSRFGEQSNPQIAEALGVSIKTVEYR
ITQSLKILRVKLKDYLPFIMFLF

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21795; Mature: 21795

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSTLIEQIQLGSKDAFKQMFIKFYSPLCEYASQYVSDEDAEELIQELMLFIWENRNSL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE
FVEISLKSYLFMAVKHRCLNAIKRQLYHERVHSLIYDKIKDQFENPDTYFVNELTENITK
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AIEELPENYRETFKLSRFGEQSNPQIAEALGVSIKTVEYRITQSLKILRVKLKDYLPFIM
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLF
HHC
>Mature Secondary Structure
MDDSTLIEQIQLGSKDAFKQMFIKFYSPLCEYASQYVSDEDAEELIQELMLFIWENRNSL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE
FVEISLKSYLFMAVKHRCLNAIKRQLYHERVHSLIYDKIKDQFENPDTYFVNELTENITK
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AIEELPENYRETFKLSRFGEQSNPQIAEALGVSIKTVEYRITQSLKILRVKLKDYLPFIM
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLF
HHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA