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The map label for this gene is ntrY [H]

Identifier: 150008562

GI number: 150008562

Start: 2308658

End: 2309959

Strand: Reverse

Name: ntrY [H]

Synonym: BDI_1948

Alternate gene names: 150008562

Gene position: 2309959-2308658 (Counterclockwise)

Preceding gene: 150008563

Following gene: 150008561

Centisome position: 48.01

GC content: 46.93

Gene sequence:

>1302_bases
ATGAGGCTGAAAGGACTATTCTGGATATTGACGACGCTGCTGTTGACTATATTGGCGGTGGTGACTTATTATGTCTTTTA
TACGTCTTCTATCCGGATGTTTTTCGCGGTAGAAGCCTTGGTCTTGCTTACGATCATCTATTTATTTGTCTTTTATCGCC
GTATCATAAAGCCCTTGCATATCATCGGTAACGGTATGGAGCTGTTGAAAGAGCAAGACTTTAGTTCCCGCTTGGGAAAG
GTCGGGCAAACGGAGGCGGACCGGGTGGTCGATGTGTTTAATAAGATGATGGAGCAGTTGAAGAATGAGCGTTTGCACCT
CCGGGAGCAAAACCATTTCTTGGACTTGCTGGTCAACGCCTCTCCGATGGGAGTGATCATCTTGAACTTGGATGAGGAGA
TTCTATCCATGAACCCGGCCGCATGTAAATTGTTTGGCGCGCAAAGCTCGGAGGATATGGTGGGAAAACGTTTTCTTCAA
CTAGATTCTCCCTTGGCGGAAGAATTGGTACGGGTTCCGATGTATCAAGCGCAAACCGTCCGGTTGAACGACGCTAATAT
TTATAAATGTACGCATTCCTCATTTGTGGATCGAGGTTTTCACCACCCGTTTTATTTGATAGAGACGTTGACCCAAGAGG
TGTTCAAGGCCGAGAAGAAAGCGTATGAGAAAGTGATACGTATGATCTCTCATGAGGTGAATAATACGACCGCGGGTATC
ACCTCTACCTTGGATACGTTGGAGTCTACTTTCAGCGGGATGGAAGATATGGAGGATGTCTGCGAGGTTTTGCGGGTCTC
CATAGAACGCTGCTATAGCATGAGCCATTTCATCACCAATTTCGCCGATGTGGTGCGTATACCCGAACCCCAAAGTCGTC
CGCAAGCATTGAACCAAGTGGTGTCCGCTTGTAAACGCTTTATGGAGACAGTTTGCCAGAACCGGAATATCGAGATTGTT
ATGGATCTGAGCGAGGAATCTCCAGTCGTGAATTTGGATAATTCATTATTCGAGCAAGTCTTGGTCAATATTATCAAGAA
TGCCGCCGAATCCATCGACCGGGACGGAAAGATCTATATCCGGACGACAGTGCGTCCTACCTGCTTGGAGATAGCCGATA
CGGGCAAGGGCATCGACAAGGAAACGGAAACGAAACTGTTCAGCCCGTTCTTCTCTACGAAACCGAACGGACAAGGTATC
GGCTTGATCTTTATCCGTGAGGTGCTGTTAAAACATGATTGCCGATTCTCTCTCCGCTCTTACGCGGATGGATTGACAAG
GTTTAAGATTTGGTTTAGTTGA

Upstream 100 bases:

>100_bases
TTTATCGCATGTCGCTACGGCGTTGGGAATCAGTCGTGCCGCCTTGTACCGGAGATTAGAGAAATACGGAATCCCGATCG
ATAAATAAGAAGAGGCAAGG

Downstream 100 bases:

>100_bases
AATAATCCCTTTATGGTTTGAGGTTTTTCCCTTGTAGGCTAAGGCTGTATTCTTACAGGTGTTAGCCTTTTTGTCTGCTT
GTATTCATCATGCAACAGCC

Product: two-component system sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRLKGLFWILTTLLLTILAVVTYYVFYTSSIRMFFAVEALVLLTIIYLFVFYRRIIKPLHIIGNGMELLKEQDFSSRLGK
VGQTEADRVVDVFNKMMEQLKNERLHLREQNHFLDLLVNASPMGVIILNLDEEILSMNPAACKLFGAQSSEDMVGKRFLQ
LDSPLAEELVRVPMYQAQTVRLNDANIYKCTHSSFVDRGFHHPFYLIETLTQEVFKAEKKAYEKVIRMISHEVNNTTAGI
TSTLDTLESTFSGMEDMEDVCEVLRVSIERCYSMSHFITNFADVVRIPEPQSRPQALNQVVSACKRFMETVCQNRNIEIV
MDLSEESPVVNLDNSLFEQVLVNIIKNAAESIDRDGKIYIRTTVRPTCLEIADTGKGIDKETETKLFSPFFSTKPNGQGI
GLIFIREVLLKHDCRFSLRSYADGLTRFKIWFS

Sequences:

>Translated_433_residues
MRLKGLFWILTTLLLTILAVVTYYVFYTSSIRMFFAVEALVLLTIIYLFVFYRRIIKPLHIIGNGMELLKEQDFSSRLGK
VGQTEADRVVDVFNKMMEQLKNERLHLREQNHFLDLLVNASPMGVIILNLDEEILSMNPAACKLFGAQSSEDMVGKRFLQ
LDSPLAEELVRVPMYQAQTVRLNDANIYKCTHSSFVDRGFHHPFYLIETLTQEVFKAEKKAYEKVIRMISHEVNNTTAGI
TSTLDTLESTFSGMEDMEDVCEVLRVSIERCYSMSHFITNFADVVRIPEPQSRPQALNQVVSACKRFMETVCQNRNIEIV
MDLSEESPVVNLDNSLFEQVLVNIIKNAAESIDRDGKIYIRTTVRPTCLEIADTGKGIDKETETKLFSPFFSTKPNGQGI
GLIFIREVLLKHDCRFSLRSYADGLTRFKIWFS
>Mature_433_residues
MRLKGLFWILTTLLLTILAVVTYYVFYTSSIRMFFAVEALVLLTIIYLFVFYRRIIKPLHIIGNGMELLKEQDFSSRLGK
VGQTEADRVVDVFNKMMEQLKNERLHLREQNHFLDLLVNASPMGVIILNLDEEILSMNPAACKLFGAQSSEDMVGKRFLQ
LDSPLAEELVRVPMYQAQTVRLNDANIYKCTHSSFVDRGFHHPFYLIETLTQEVFKAEKKAYEKVIRMISHEVNNTTAGI
TSTLDTLESTFSGMEDMEDVCEVLRVSIERCYSMSHFITNFADVVRIPEPQSRPQALNQVVSACKRFMETVCQNRNIEIV
MDLSEESPVVNLDNSLFEQVLVNIIKNAAESIDRDGKIYIRTTVRPTCLEIADTGKGIDKETETKLFSPFFSTKPNGQGI
GLIFIREVLLKHDCRFSLRSYADGLTRFKIWFS

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=434, Percent_Identity=25.3456221198157, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790436, Length=230, Percent_Identity=19.5652173913043, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790300, Length=354, Percent_Identity=22.8813559322034, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 49672; Mature: 49672

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKGLFWILTTLLLTILAVVTYYVFYTSSIRMFFAVEALVLLTIIYLFVFYRRIIKPLH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGNGMELLKEQDFSSRLGKVGQTEADRVVDVFNKMMEQLKNERLHLREQNHFLDLLVNA
HHCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECC
SPMGVIILNLDEEILSMNPAACKLFGAQSSEDMVGKRFLQLDSPLAEELVRVPMYQAQTV
CCCEEEEEECCHHHHCCCHHHHEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
RLNDANIYKCTHSSFVDRGFHHPFYLIETLTQEVFKAEKKAYEKVIRMISHEVNNTTAGI
EECCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TSTLDTLESTFSGMEDMEDVCEVLRVSIERCYSMSHFITNFADVVRIPEPQSRPQALNQV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VSACKRFMETVCQNRNIEIVMDLSEESPVVNLDNSLFEQVLVNIIKNAAESIDRDGKIYI
HHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEE
RTTVRPTCLEIADTGKGIDKETETKLFSPFFSTKPNGQGIGLIFIREVLLKHDCRFSLRS
EECCCCHHHHHHHCCCCCCCHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
YADGLTRFKIWFS
HHCCHHHEEEEEC
>Mature Secondary Structure
MRLKGLFWILTTLLLTILAVVTYYVFYTSSIRMFFAVEALVLLTIIYLFVFYRRIIKPLH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGNGMELLKEQDFSSRLGKVGQTEADRVVDVFNKMMEQLKNERLHLREQNHFLDLLVNA
HHCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECC
SPMGVIILNLDEEILSMNPAACKLFGAQSSEDMVGKRFLQLDSPLAEELVRVPMYQAQTV
CCCEEEEEECCHHHHCCCHHHHEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
RLNDANIYKCTHSSFVDRGFHHPFYLIETLTQEVFKAEKKAYEKVIRMISHEVNNTTAGI
EECCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TSTLDTLESTFSGMEDMEDVCEVLRVSIERCYSMSHFITNFADVVRIPEPQSRPQALNQV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VSACKRFMETVCQNRNIEIVMDLSEESPVVNLDNSLFEQVLVNIIKNAAESIDRDGKIYI
HHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEE
RTTVRPTCLEIADTGKGIDKETETKLFSPFFSTKPNGQGIGLIFIREVLLKHDCRFSLRS
EECCCCHHHHHHHCCCCCCCHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
YADGLTRFKIWFS
HHCCHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]