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The map label for this gene is rimN [H]

Identifier: 150008371

GI number: 150008371

Start: 2068889

End: 2069449

Strand: Reverse

Name: rimN [H]

Synonym: BDI_1745

Alternate gene names: 150008371

Gene position: 2069449-2068889 (Counterclockwise)

Preceding gene: 150008374

Following gene: 150008370

Centisome position: 43.01

GC content: 48.31

Gene sequence:

>561_bases
ATGACGGAAGATATTAAAAAAGCTTGCGAAGTAATGGCCGCAGGCGGCATAATACTTTATCCTACAGACACTATCTGGGG
AATTGGTTGCGACGCTACCAATGAAAAAGCCGTACAAAGAGTGTACGAGCTAAAGCGAAGGACAGACAATAAGGCTATGT
TGGTCTTGATGGACAGCGAGGCTAAATTGGATAGGTACGTGTCGGATGTTCCCGATATCGCTTGGGATTTGATTAGCGTG
TCTGATAAGCCGTTGACCATCATTTACTCAAGTGCCAAGAACTTGGCGACAAATCTATTGGGAGCCGATGGTAGCGTGGG
TATCCGTATCACGAACGAGGAGTTCTCCAAGAAATTGTGCGAGCGCTTCCGTAAACCTTTGGTCTCTACTTCCGCCAACG
TAAGCGGCGAGCCTTCTCCCGCTAATTTCAGCGAGGTATCGGAGGTGATCAAGGAGGGTGTGGATTATATCGTGAGTTAT
CGTCAGGACGATATGAGCAAGGCCGCTCCGTCCGGCATTATCAAGTTAGGAGCCGGTGGGCTTGTGCAGGTAATTAGATA
A

Upstream 100 bases:

>100_bases
ATGGTATATCCGGTATGGCTTAAAGAAAATAGTTTTTTTGTTATTATTTTTTTGAAGTAGGAGAATGATTCGTACATTTG
CCTAAATATTATAAAATACA

Downstream 100 bases:

>100_bases
GGATGAAGAAAAGCGTACAAGCCGGAAAATATATTGTCTCGGATTTTATAGCGTCGTCGGTAGTCTGGTTATTATTTAAC
CTGATACGCTATGAGGAGGT

Product: putative translation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MTEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSEAKLDRYVSDVPDIAWDLISV
SDKPLTIIYSSAKNLATNLLGADGSVGIRITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEVSEVIKEGVDYIVSY
RQDDMSKAAPSGIIKLGAGGLVQVIR

Sequences:

>Translated_186_residues
MTEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSEAKLDRYVSDVPDIAWDLISV
SDKPLTIIYSSAKNLATNLLGADGSVGIRITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEVSEVIKEGVDYIVSY
RQDDMSKAAPSGIIKLGAGGLVQVIR
>Mature_185_residues
TEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSEAKLDRYVSDVPDIAWDLISVS
DKPLTIIYSSAKNLATNLLGADGSVGIRITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEVSEVIKEGVDYIVSYR
QDDMSKAAPSGIIKLGAGGLVQVIR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=150, Percent_Identity=32.6666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI2367210, Length=145, Percent_Identity=33.7931034482759, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87081864, Length=159, Percent_Identity=25.7861635220126, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI78707274, Length=144, Percent_Identity=34.0277777777778, Blast_Score=83, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20250; Mature: 20119

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSE
CCHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
AKLDRYVSDVPDIAWDLISVSDKPLTIIYSSAKNLATNLLGADGSVGIRITNEEFSKKLC
HHHHHHHHHCHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEECCHHHHHHHH
ERFRKPLVSTSANVSGEPSPANFSEVSEVIKEGVDYIVSYRQDDMSKAAPSGIIKLGAGG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCC
LVQVIR
HHHHCC
>Mature Secondary Structure 
TEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSE
CHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
AKLDRYVSDVPDIAWDLISVSDKPLTIIYSSAKNLATNLLGADGSVGIRITNEEFSKKLC
HHHHHHHHHCHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEECCHHHHHHHH
ERFRKPLVSTSANVSGEPSPANFSEVSEVIKEGVDYIVSYRQDDMSKAAPSGIIKLGAGG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCC
LVQVIR
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA