Click here to switch to the map view.

The map label for this gene is 150008317

Identifier: 150008317

GI number: 150008317

Start: 2000196

End: 2000909

Strand: Reverse

Name: 150008317

Synonym: BDI_1686

Alternate gene names: NA

Gene position: 2000909-2000196 (Counterclockwise)

Preceding gene: 150008320

Following gene: 150008311

Centisome position: 41.59

GC content: 43.42

Gene sequence:

>714_bases
ATGAGCAAAGATGTTTGTTATCGTGAGTTTATAAAGCTGTATGATGGAGTTGCTGATTTTGGTTCAATTTGTTTTTACCT
TTGGGAATTTTGCATACATTTGAACCTATGTAATCGAAGTGGGAGAATAAGTCGAATGGCAGACATTGATTCAGAGAAAG
AAAGAAGGCTTGTGGCGGACTTGCTAGAAGGGGACGAGTCGGCCTTTTGTGAATTATATGCCCTGTATAAGGACCGCTTG
ATGTGGTTTTCCTTGAAATTCCTTAAATCCCGGGATATGGCGGAAGATGTTTTTCAGGATGCTTTCGCCTCTATTTGGCA
GAATCGCCGTTTCTTGAACCCGAATGTACCTTTTGGCCCGTATGTGTATACGATCGTGAAAAATCGGATCTTAAACCTGT
TGGCGGGACTGGATCGTGAGTTGGAGCTGAGGGATAAGATACGGTCCGCCTCATTGGATAGCACGAACGAGACGGAGGAC
TCGGTATTGGATACGGATTTAAACGCATTGTTGGATAAGGCGCTTGAAACGTTGACCCCACAACAAAAAAGGGTTTTTGA
TATGAGCCGTAAAGATATGAAATCCCATAAGGAGATAGCCGACAGTTTGGGTATCTCGGTATATACGGTACAACAACATA
TCTCTACGGCCTTGAAAGTGATCCGGGCGTTTCTGGCTAAATATGCGGAGACTTATATGAAGCTACTGCTCTAA

Upstream 100 bases:

>100_bases
GCGATTTCCCGGGCCACACTCGGCTTTTCGGCGATACAAACTTTCATCAATACATCATCCTTTCTTAAATGAACAGACAA
AAATACATGATTATTTCCGA

Downstream 100 bases:

>100_bases
AAACACACCTCCCTTTATTCATATTCCCGATAGGCACCGAACCGGGCTAAGCGATCCTCGCCGAGTTGTTCCGGTACAGG
TTGCGGGGAGAGGCCCAAGC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; Sigma Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSKDVCYREFIKLYDGVADFGSICFYLWEFCIHLNLCNRSGRISRMADIDSEKERRLVADLLEGDESAFCELYALYKDRL
MWFSLKFLKSRDMAEDVFQDAFASIWQNRRFLNPNVPFGPYVYTIVKNRILNLLAGLDRELELRDKIRSASLDSTNETED
SVLDTDLNALLDKALETLTPQQKRVFDMSRKDMKSHKEIADSLGISVYTVQQHISTALKVIRAFLAKYAETYMKLLL

Sequences:

>Translated_237_residues
MSKDVCYREFIKLYDGVADFGSICFYLWEFCIHLNLCNRSGRISRMADIDSEKERRLVADLLEGDESAFCELYALYKDRL
MWFSLKFLKSRDMAEDVFQDAFASIWQNRRFLNPNVPFGPYVYTIVKNRILNLLAGLDRELELRDKIRSASLDSTNETED
SVLDTDLNALLDKALETLTPQQKRVFDMSRKDMKSHKEIADSLGISVYTVQQHISTALKVIRAFLAKYAETYMKLLL
>Mature_236_residues
SKDVCYREFIKLYDGVADFGSICFYLWEFCIHLNLCNRSGRISRMADIDSEKERRLVADLLEGDESAFCELYALYKDRLM
WFSLKFLKSRDMAEDVFQDAFASIWQNRRFLNPNVPFGPYVYTIVKNRILNLLAGLDRELELRDKIRSASLDSTNETEDS
VLDTDLNALLDKALETLTPQQKRVFDMSRKDMKSHKEIADSLGISVYTVQQHISTALKVIRAFLAKYAETYMKLLL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27578; Mature: 27447

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDVCYREFIKLYDGVADFGSICFYLWEFCIHLNLCNRSGRISRMADIDSEKERRLVAD
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH
LLEGDESAFCELYALYKDRLMWFSLKFLKSRDMAEDVFQDAFASIWQNRRFLNPNVPFGP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
YVYTIVKNRILNLLAGLDRELELRDKIRSASLDSTNETEDSVLDTDLNALLDKALETLTP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
QQKRVFDMSRKDMKSHKEIADSLGISVYTVQQHISTALKVIRAFLAKYAETYMKLLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SKDVCYREFIKLYDGVADFGSICFYLWEFCIHLNLCNRSGRISRMADIDSEKERRLVAD
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH
LLEGDESAFCELYALYKDRLMWFSLKFLKSRDMAEDVFQDAFASIWQNRRFLNPNVPFGP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
YVYTIVKNRILNLLAGLDRELELRDKIRSASLDSTNETEDSVLDTDLNALLDKALETLTP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
QQKRVFDMSRKDMKSHKEIADSLGISVYTVQQHISTALKVIRAFLAKYAETYMKLLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA