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The map label for this gene is rho [H]

Identifier: 150008035

GI number: 150008035

Start: 1624387

End: 1626369

Strand: Reverse

Name: rho [H]

Synonym: BDI_1398

Alternate gene names: 150008035

Gene position: 1626369-1624387 (Counterclockwise)

Preceding gene: 150008036

Following gene: 150008033

Centisome position: 33.8

GC content: 47.76

Gene sequence:

>1983_bases
ATGCAGAAATATAACATTCTAGAACTAAATGAAAAACTTCTTCCCGAACTTCAAAGTATCGCGGAAGAGTTGGGAATAAA
AAAAGTTAGCAGCTTAAAGAAAGAAGAGTTGGTTTATCGGATTCTTGATGAGCAAGCGATCTCCTATGCCGGCATTCAGG
CTGAAAAGATGAAAGAGAAAGAGGCTAAGAAGCCTGTAGAGGGCCGTAAGAGAGGCCGTCCGGCTAAAGCCGCTTCTCCT
AAAGTGGCGAAGGCTGAGACTGCCGAAGCTGCAGAGAGTGCCCAACAGGCTTCGGAAAAGCCAGTGGCTGCTCCGGCTGA
CAAGAAAGAGCAAAAAGAGCAGCCTGAACGTAAGAAAAGAGTCCGTATCGAGAAAAAGGAAAAGGTAGCGGGCGCTATCG
CTCCTTCCGAGGATAACAAGGAAGTGGTGGTTTCGAAAGAGCCGCAAACGATCTCTATGGTAACGGAAATCTCGGCCGTG
GAAACTCCGGCGGTAGTAGAGAGCCCGGTGGAGAAACCGTTGTTGCCTCCTGTTGTGGCGGAACTTGAAACGGAAGAAGA
AGCCGCTTTGCCGGAAAATACGACTCCGGTAGAGGTAGCGGAAGAAACCACTTCACCACAAGCGACGGAAGAAGAGCCTA
AGCGCATCGTATTTCGCCATCCGGACGCTAAATCCGTATTGGATCAGATTTTCCCGTTCTCCGCTCCGAAACCCGAGGCT
AACAAACCTCAACCCGAGGCCGCTCCCCAGCAGAATAATCCTCGACAGAACAATCGACAGAATAATCATAATAACAACCG
TAATAACAATAACGCTAATAACAACCAGCAGGCTCAAGAGAAAATGTATGAGTTTGACGGCATCCTTACAGGAACCGGCG
TGTTGGAGATGATGCAAGATGGTTACGGTTTCCTTCGTTCTTCAGATTATAACTATTTGACTTCACCGGACGATATTTAT
GTCTCTCAATCCCAGATCAAGTTATTTGGCTTGAAAACGGGTGACGTGGTAGAAGGCTCGATTCGTCCGCCGAAGGAAGG
TGAGAAGTATTTCCCGTTGGTGAAAGTGGACAAGATCAATGGCCGTACGCCGGAAGAGGTTCGCGACCGGGTTCCTTTCG
ATCATTTGACCCCGTTATTCCCGGATGAGAAATTCATGCTTACGGCACGTAAATCACCGAAAGTATACGATAATATCGCC
GTACGTGTGGTTGATTTATTCTCCCCGATCGGAAAAGGGCAACGTGGTTTGATCGTCGCTCAACCGAAAACCGGTAAGAC
GATGTTGCTGAAAGATATCGCGAACGCTATCGCTTACAACCATCCCGAGGTTTATATGATTATATTATTGATCGACGAAC
GTCCAGAGGAGGTTACGGATATGGCTCGTAGCGTGGATGCGGAAGTAATCGCTTCTACATTCGACGAACCAGCTGAACGT
CACGTGAAAATCGCTGAGATCGTATTGAACAAGGCGAAACGAATGGTAGAATGTGGTCATGATGTCGTGATTCTTCTTGA
CTCGATCACTCGTTTGGCTCGTGCTTATAATACGGTACAACCGGCTTCCGGTAAGGTGCTTTCCGGTGGTGTGGACGCAA
ATGCGTTGCAGAAGCCGAAGCGTTTCTTCGGTGCCGCCCGTAATATTGAGAATGGCGGTAGCCTTACGATTCTAGCCACC
GCCCTTACGGAGACTGGCTCTAAGATGGACGACGTGATCTTCGAGGAATTCAAGGGTACGGGTAATATGGAGTTACAATT
GGATCGTAAATTAGCCAATAAACGTATCTATCCGGCTGTGGATATCACGGCTTCCAGCACTCGCCGTGATGATTTATTGC
AGGATGAGAGCACGTTGAACCGTATGTGGGTCTTACGCAAATATCTATCAGACATGAACTCTATGGAGGCTATGGAATTT
GTTAAGCAACGGATGGAACAAACCGTTGATAATATGGAATTCTTGGCATCCATGAACGGTTGA

Upstream 100 bases:

>100_bases
AAATTATAATTTAATAAAGATACAATGATACCATTGGGCGTACGTCGTGTTTGCATATGTGATCCGTGTGTATGTGCCAT
TTATATTATTACTTCGCAAT

Downstream 100 bases:

>100_bases
TAATATCCCATAAAAAACACTATACTTTTGAGTTCGAAACATATTGTTTTAGCTCCAAAAGTATAGTGTTTTTGATTTAA
AAGAATAATGCTTTTATTGC

Product: transcription termination factor Rho

Products: NA

Alternate protein names: ATP-dependent helicase Rho [H]

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKMKEKEAKKPVEGRKRGRPAKAASP
KVAKAETAEAAESAQQASEKPVAAPADKKEQKEQPERKKRVRIEKKEKVAGAIAPSEDNKEVVVSKEPQTISMVTEISAV
ETPAVVESPVEKPLLPPVVAELETEEEAALPENTTPVEVAEETTSPQATEEEPKRIVFRHPDAKSVLDQIFPFSAPKPEA
NKPQPEAAPQQNNPRQNNRQNNHNNNRNNNNANNNQQAQEKMYEFDGILTGTGVLEMMQDGYGFLRSSDYNYLTSPDDIY
VSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVDKINGRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDNIA
VRVVDLFSPIGKGQRGLIVAQPKTGKTMLLKDIANAIAYNHPEVYMIILLIDERPEEVTDMARSVDAEVIASTFDEPAER
HVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILAT
ALTETGSKMDDVIFEEFKGTGNMELQLDRKLANKRIYPAVDITASSTRRDDLLQDESTLNRMWVLRKYLSDMNSMEAMEF
VKQRMEQTVDNMEFLASMNG

Sequences:

>Translated_660_residues
MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKMKEKEAKKPVEGRKRGRPAKAASP
KVAKAETAEAAESAQQASEKPVAAPADKKEQKEQPERKKRVRIEKKEKVAGAIAPSEDNKEVVVSKEPQTISMVTEISAV
ETPAVVESPVEKPLLPPVVAELETEEEAALPENTTPVEVAEETTSPQATEEEPKRIVFRHPDAKSVLDQIFPFSAPKPEA
NKPQPEAAPQQNNPRQNNRQNNHNNNRNNNNANNNQQAQEKMYEFDGILTGTGVLEMMQDGYGFLRSSDYNYLTSPDDIY
VSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVDKINGRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDNIA
VRVVDLFSPIGKGQRGLIVAQPKTGKTMLLKDIANAIAYNHPEVYMIILLIDERPEEVTDMARSVDAEVIASTFDEPAER
HVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILAT
ALTETGSKMDDVIFEEFKGTGNMELQLDRKLANKRIYPAVDITASSTRRDDLLQDESTLNRMWVLRKYLSDMNSMEAMEF
VKQRMEQTVDNMEFLASMNG
>Mature_660_residues
MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKMKEKEAKKPVEGRKRGRPAKAASP
KVAKAETAEAAESAQQASEKPVAAPADKKEQKEQPERKKRVRIEKKEKVAGAIAPSEDNKEVVVSKEPQTISMVTEISAV
ETPAVVESPVEKPLLPPVVAELETEEEAALPENTTPVEVAEETTSPQATEEEPKRIVFRHPDAKSVLDQIFPFSAPKPEA
NKPQPEAAPQQNNPRQNNRQNNHNNNRNNNNANNNQQAQEKMYEFDGILTGTGVLEMMQDGYGFLRSSDYNYLTSPDDIY
VSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVDKINGRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDNIA
VRVVDLFSPIGKGQRGLIVAQPKTGKTMLLKDIANAIAYNHPEVYMIILLIDERPEEVTDMARSVDAEVIASTFDEPAER
HVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILAT
ALTETGSKMDDVIFEEFKGTGNMELQLDRKLANKRIYPAVDITASSTRRDDLLQDESTLNRMWVLRKYLSDMNSMEAMEF
VKQRMEQTVDNMEFLASMNG

Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]

COG id: COG1158

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rho family [H]

Homologues:

Organism=Escherichia coli, GI1790217, Length=370, Percent_Identity=60.8108108108108, Blast_Score=481, Evalue=1e-137,

Paralogues:

None

Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR012340
- InterPro:   IPR011113
- InterPro:   IPR004665 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF07497 Rho_RNA_bind [H]

EC number: NA

Molecular weight: Translated: 73683; Mature: 73683

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKMKEK
CCCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
EAKKPVEGRKRGRPAKAASPKVAKAETAEAAESAQQASEKPVAAPADKKEQKEQPERKKR
HHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHH
VRIEKKEKVAGAIAPSEDNKEVVVSKEPQTISMVTEISAVETPAVVESPVEKPLLPPVVA
CCCHHHHHHHCCCCCCCCCCEEEEECCCCEEHHHHHHHHHCCCHHHHCCCCCCCCCHHHH
ELETEEEAALPENTTPVEVAEETTSPQATEEEPKRIVFRHPDAKSVLDQIFPFSAPKPEA
HCCCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCC
NKPQPEAAPQQNNPRQNNRQNNHNNNRNNNNANNNQQAQEKMYEFDGILTGTGVLEMMQD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCHHHHHHHHC
GYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVDKIN
CCHHEECCCCCCCCCCCCEEEECCEEEEEECCCCCEEECCCCCCCCCCCCCCEEEEECCC
GRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDNIAVRVVDLFSPIGKGQRGLIVA
CCCHHHHHHCCCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
QPKTGKTMLLKDIANAIAYNHPEVYMIILLIDERPEEVTDMARSVDAEVIASTFDEPAER
CCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHH
HVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPK
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHH
RFFGAARNIENGGSLTILATALTETGSKMDDVIFEEFKGTGNMELQLDRKLANKRIYPAV
HHHHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCEE
DITASSTRRDDLLQDESTLNRMWVLRKYLSDMNSMEAMEFVKQRMEQTVDNMEFLASMNG
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKMKEK
CCCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
EAKKPVEGRKRGRPAKAASPKVAKAETAEAAESAQQASEKPVAAPADKKEQKEQPERKKR
HHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHH
VRIEKKEKVAGAIAPSEDNKEVVVSKEPQTISMVTEISAVETPAVVESPVEKPLLPPVVA
CCCHHHHHHHCCCCCCCCCCEEEEECCCCEEHHHHHHHHHCCCHHHHCCCCCCCCCHHHH
ELETEEEAALPENTTPVEVAEETTSPQATEEEPKRIVFRHPDAKSVLDQIFPFSAPKPEA
HCCCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCC
NKPQPEAAPQQNNPRQNNRQNNHNNNRNNNNANNNQQAQEKMYEFDGILTGTGVLEMMQD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCHHHHHHHHC
GYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVDKIN
CCHHEECCCCCCCCCCCCEEEECCEEEEEECCCCCEEECCCCCCCCCCCCCCEEEEECCC
GRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDNIAVRVVDLFSPIGKGQRGLIVA
CCCHHHHHHCCCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
QPKTGKTMLLKDIANAIAYNHPEVYMIILLIDERPEEVTDMARSVDAEVIASTFDEPAER
CCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHH
HVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPK
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHH
RFFGAARNIENGGSLTILATALTETGSKMDDVIFEEFKGTGNMELQLDRKLANKRIYPAV
HHHHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCEE
DITASSTRRDDLLQDESTLNRMWVLRKYLSDMNSMEAMEFVKQRMEQTVDNMEFLASMNG
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA