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The map label for this gene is yhgF [C]

Identifier: 150008009

GI number: 150008009

Start: 1592172

End: 1594298

Strand: Direct

Name: yhgF [C]

Synonym: BDI_1372

Alternate gene names: 150008009

Gene position: 1592172-1594298 (Clockwise)

Preceding gene: 150008007

Following gene: 150008010

Centisome position: 33.09

GC content: 51.72

Gene sequence:

>2127_bases
ATGACAAACGTATTTCACACGCTTATAGCCCGTTTTCTACAAATTCCGGAAGGACAAGTGGAACGGACAATCGGGCTCTT
GAACGAAGGCGCTACCATACCTTTTATAAGTCGTTACCGGAAAGAGGTGACCGGAGGATTAGACGAGGTGCAAATCGGTG
CCATCAAAGATCAACTGGATAAACTGACGGAACTGCGCAAACGAAAGGAAACGATCCTCGCCACGATAGAAGAGCAAGAG
AAACTTACTCCCGAGCTCCGGAAACGCATCGAGGAGTCTTGGGATAGCACCGAGATCGAGGATTTATATCTCCCTTACAA
ACCGAAACGGGTCACCAAGGCGGAGATCGCACGCCGAAAAGGACTGGAGCCCTTGGCTAAGATCGTTATGATGCAAAACG
AGAATAACCTATCCGCACGTATCAAGAGCTTTATCAAGGGGGAAGTGAAAAACGCCGAAGAAGCCTTGCAAGGGGCACGG
GACATTATCGCCGAATGGATCAACGAGAACGAATCGGCACGTAACACCGTACGTAACTCTTTCGCTCATACCGCCATGAT
CACATCCAAAGTGATCAAGGGGAAAGAAGAGGAAGGCGCCAAATACCGGGATTACTTTGATTTCAGCGAGCCTTTGAACC
GGGCCAGTTCCCATCGCTTATTGGCTCTCCGACGGGGAGAGGCGGAAGGTATCCTTCGTGTAAGTATCTCTCCCGACGCG
GAATCTTGTCTGGATCGCTTGAACCGGCGTTTCGTAAAAGGTCGTGGAGAGGTTTCCGAGCAAGTGGCTACAGCTGTCGA
CGATTCTTTCAAACGCCTGCTGAAACCCTCTATCGAGACGGAGTTCTCCAACCAGAGCAAGGCGAAAGCCGATGAGGAGG
CGATCCGGGTATTTGCCGAGAACCTCCGGCAATTGCTGCTCGCTCCTCCCTTGGGACAAAAACGGGTATTAGGCGTAGAC
CCCGGATACCGTACCGGATGTAAGTTGGTCTGTCTGGATGCGCAGGGGAATTTACTGCATAACGAGGCGATCTTCCCGCA
TCCGCCCCAGAACGAGAAGGGCAAAGCCGCCGCTAAGGTCGCCCAGTTAGTAGCCACTTACGCCATAGATGCCATTGCCA
TCGGTAATGGTACCGCCAGTCGTGAAACCGAGCAGTTCATCACGAATATACGATACGACCGCAAGGTACAAGTGTTCGTA
GTCAGCGAGAACGGAGCCTCTATCTATTCTGCGTCCAAGATCGCTAGGGAGGAGTTTCCCGAATACGACGTCACGGTACG
CGGAGCTGTCAGCATCGGTCGCCGGCTGATGGACCCTTTGGCCGAGTTGGTCAAGATCGACCCGAAGAGTATCGGTGTCG
GCCAATACCAGCACGACGTAGAGCAAAACGCCTTGAAAAAGAGTCTGGATCAAACCGTGGAGAGTTGCGTGAATTTAGTA
GGTGTAAACGTGAATACGGCGAGCAAGCATTTGTTGACTTACATCTCGGGATTAGGCCCTACGCTAGCGCAAAACATCGT
GAATTACCGGGCGGAGCACGGACCCTTCACTTCCCGGAAAGAACTGATGAAAGTCCCCCGTATGGGAGAGAAAGCTTTCG
AGCAAAGCGCCGGATTCCTACGGATACCCGACGGAAAGAACCCGTTGGACAACTCAGCCGTACACCCCGAGAGCTACCCG
ATCGTCGAACGGATGGCCAAGGACCTAAAATGCTCGGTAGCCGACCTGATCACCGACAAAGCGCTTAAAAAGAAACTAAA
ACTAACGGACTACCTTACGGATAAGGTCGGGATGCCTACCCTGCTTGATATCATGGAGGAACTGGATAAACCGGGCCGTG
ATCCCCGCCAAACGATCCAAGTATTCGCGTTCGATCCTACGGTGAAAACGATCGAGGATTTGAAAGAAGGGCAAGTATTG
CCCGGTATCGTGAACAACATCACCAACTTCGGTTGTTTCGTCGATGTAGGGATCAAGGAAAACGGGCTTGTCCATATCTC
CGAGCTGGCGGATCGTTTCGTAAGCGATCCTACCCAAGTGGTCTCCATCCATCAGCATGTCAAGGTGAAGGTTCTAAGCG
TAGACCTATCCAGAAAACGTGTTCAATTATCCATGAAAGGGATCTAA

Upstream 100 bases:

>100_bases
ATTAATGAAAGATACAAATAATAAGCCCAAGAAGTGAGCATCCCGACCGAAAATATAAGCAAAACCGTATATTTGTACTC
CAATTCTAAGAAAACTAGAT

Downstream 100 bases:

>100_bases
ACGATGAAAGAGAAGATTAATAAGACAAACGTGGCACGCCTGCTGGACAAGGCTAAGATCGCCTACCAGCTCGTGCCTTA
TGAAGTAGACGAGAATGATC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 708; Mature: 707

Protein sequence:

>708_residues
MTNVFHTLIARFLQIPEGQVERTIGLLNEGATIPFISRYRKEVTGGLDEVQIGAIKDQLDKLTELRKRKETILATIEEQE
KLTPELRKRIEESWDSTEIEDLYLPYKPKRVTKAEIARRKGLEPLAKIVMMQNENNLSARIKSFIKGEVKNAEEALQGAR
DIIAEWINENESARNTVRNSFAHTAMITSKVIKGKEEEGAKYRDYFDFSEPLNRASSHRLLALRRGEAEGILRVSISPDA
ESCLDRLNRRFVKGRGEVSEQVATAVDDSFKRLLKPSIETEFSNQSKAKADEEAIRVFAENLRQLLLAPPLGQKRVLGVD
PGYRTGCKLVCLDAQGNLLHNEAIFPHPPQNEKGKAAAKVAQLVATYAIDAIAIGNGTASRETEQFITNIRYDRKVQVFV
VSENGASIYSASKIAREEFPEYDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVEQNALKKSLDQTVESCVNLV
GVNVNTASKHLLTYISGLGPTLAQNIVNYRAEHGPFTSRKELMKVPRMGEKAFEQSAGFLRIPDGKNPLDNSAVHPESYP
IVERMAKDLKCSVADLITDKALKKKLKLTDYLTDKVGMPTLLDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVL
PGIVNNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI

Sequences:

>Translated_708_residues
MTNVFHTLIARFLQIPEGQVERTIGLLNEGATIPFISRYRKEVTGGLDEVQIGAIKDQLDKLTELRKRKETILATIEEQE
KLTPELRKRIEESWDSTEIEDLYLPYKPKRVTKAEIARRKGLEPLAKIVMMQNENNLSARIKSFIKGEVKNAEEALQGAR
DIIAEWINENESARNTVRNSFAHTAMITSKVIKGKEEEGAKYRDYFDFSEPLNRASSHRLLALRRGEAEGILRVSISPDA
ESCLDRLNRRFVKGRGEVSEQVATAVDDSFKRLLKPSIETEFSNQSKAKADEEAIRVFAENLRQLLLAPPLGQKRVLGVD
PGYRTGCKLVCLDAQGNLLHNEAIFPHPPQNEKGKAAAKVAQLVATYAIDAIAIGNGTASRETEQFITNIRYDRKVQVFV
VSENGASIYSASKIAREEFPEYDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVEQNALKKSLDQTVESCVNLV
GVNVNTASKHLLTYISGLGPTLAQNIVNYRAEHGPFTSRKELMKVPRMGEKAFEQSAGFLRIPDGKNPLDNSAVHPESYP
IVERMAKDLKCSVADLITDKALKKKLKLTDYLTDKVGMPTLLDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVL
PGIVNNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI
>Mature_707_residues
TNVFHTLIARFLQIPEGQVERTIGLLNEGATIPFISRYRKEVTGGLDEVQIGAIKDQLDKLTELRKRKETILATIEEQEK
LTPELRKRIEESWDSTEIEDLYLPYKPKRVTKAEIARRKGLEPLAKIVMMQNENNLSARIKSFIKGEVKNAEEALQGARD
IIAEWINENESARNTVRNSFAHTAMITSKVIKGKEEEGAKYRDYFDFSEPLNRASSHRLLALRRGEAEGILRVSISPDAE
SCLDRLNRRFVKGRGEVSEQVATAVDDSFKRLLKPSIETEFSNQSKAKADEEAIRVFAENLRQLLLAPPLGQKRVLGVDP
GYRTGCKLVCLDAQGNLLHNEAIFPHPPQNEKGKAAAKVAQLVATYAIDAIAIGNGTASRETEQFITNIRYDRKVQVFVV
SENGASIYSASKIAREEFPEYDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVEQNALKKSLDQTVESCVNLVG
VNVNTASKHLLTYISGLGPTLAQNIVNYRAEHGPFTSRKELMKVPRMGEKAFEQSAGFLRIPDGKNPLDNSAVHPESYPI
VERMAKDLKCSVADLITDKALKKKLKLTDYLTDKVGMPTLLDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLP
GIVNNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=775, Percent_Identity=32.1290322580645, Blast_Score=366, Evalue=1e-101,
Organism=Homo sapiens, GI27597090, Length=508, Percent_Identity=24.0157480314961, Blast_Score=91, Evalue=5e-18,
Organism=Escherichia coli, GI87082262, Length=723, Percent_Identity=47.0262793914246, Blast_Score=633, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=42.1052631578947, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=701, Percent_Identity=30.8131241084165, Blast_Score=239, Evalue=5e-63,
Organism=Caenorhabditis elegans, GI17552892, Length=301, Percent_Identity=26.578073089701, Blast_Score=88, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=204, Percent_Identity=25.9803921568627, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI62484314, Length=766, Percent_Identity=32.6370757180157, Blast_Score=363, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24640080, Length=508, Percent_Identity=21.0629921259843, Blast_Score=69, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 79087; Mature: 78955

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50126 S1 ; PS00572 GLYCOSYL_HYDROL_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNVFHTLIARFLQIPEGQVERTIGLLNEGATIPFISRYRKEVTGGLDEVQIGAIKDQLD
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
KLTELRKRKETILATIEEQEKLTPELRKRIEESWDSTEIEDLYLPYKPKRVTKAEIARRK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHEECCCCCCCCHHHHHHHHC
GLEPLAKIVMMQNENNLSARIKSFIKGEVKNAEEALQGARDIIAEWINENESARNTVRNS
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FAHTAMITSKVIKGKEEEGAKYRDYFDFSEPLNRASSHRLLALRRGEAEGILRVSISPDA
HHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCH
ESCLDRLNRRFVKGRGEVSEQVATAVDDSFKRLLKPSIETEFSNQSKAKADEEAIRVFAE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHH
NLRQLLLAPPLGQKRVLGVDPGYRTGCKLVCLDAQGNLLHNEAIFPHPPQNEKGKAAAKV
HHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHH
AQLVATYAIDAIAIGNGTASRETEQFITNIRYDRKVQVFVVSENGASIYSASKIAREEFP
HHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC
EYDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVEQNALKKSLDQTVESCVNLV
CCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVNVNTASKHLLTYISGLGPTLAQNIVNYRAEHGPFTSRKELMKVPRMGEKAFEQSAGFL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHCCCEE
RIPDGKNPLDNSAVHPESYPIVERMAKDLKCSVADLITDKALKKKLKLTDYLTDKVGMPT
ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LLDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVNNITNFGCFVDVGIKE
HHHHHHHHCCCCCCHHHEEEEEEECCCHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
NGLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI
CCCEEHHHHHHHHHCCHHHHHHHHHHEEEEEEEEECCCHHHHEEECCC
>Mature Secondary Structure 
TNVFHTLIARFLQIPEGQVERTIGLLNEGATIPFISRYRKEVTGGLDEVQIGAIKDQLD
CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
KLTELRKRKETILATIEEQEKLTPELRKRIEESWDSTEIEDLYLPYKPKRVTKAEIARRK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHEECCCCCCCCHHHHHHHHC
GLEPLAKIVMMQNENNLSARIKSFIKGEVKNAEEALQGARDIIAEWINENESARNTVRNS
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FAHTAMITSKVIKGKEEEGAKYRDYFDFSEPLNRASSHRLLALRRGEAEGILRVSISPDA
HHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCH
ESCLDRLNRRFVKGRGEVSEQVATAVDDSFKRLLKPSIETEFSNQSKAKADEEAIRVFAE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHH
NLRQLLLAPPLGQKRVLGVDPGYRTGCKLVCLDAQGNLLHNEAIFPHPPQNEKGKAAAKV
HHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHH
AQLVATYAIDAIAIGNGTASRETEQFITNIRYDRKVQVFVVSENGASIYSASKIAREEFP
HHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC
EYDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVEQNALKKSLDQTVESCVNLV
CCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVNVNTASKHLLTYISGLGPTLAQNIVNYRAEHGPFTSRKELMKVPRMGEKAFEQSAGFL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHCCCEE
RIPDGKNPLDNSAVHPESYPIVERMAKDLKCSVADLITDKALKKKLKLTDYLTDKVGMPT
ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LLDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVNNITNFGCFVDVGIKE
HHHHHHHHCCCCCCHHHEEEEEEECCCHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
NGLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI
CCCEEHHHHHHHHHCCHHHHHHHHHHEEEEEEEEECCCHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]