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The map label for this gene is tnpR [H]

Identifier: 150007885

GI number: 150007885

Start: 1445421

End: 1446020

Strand: Reverse

Name: tnpR [H]

Synonym: BDI_1245

Alternate gene names: 150007885

Gene position: 1446020-1445421 (Counterclockwise)

Preceding gene: 150007887

Following gene: 150007881

Centisome position: 30.05

GC content: 43.83

Gene sequence:

>600_bases
ATGACGATAGCGTATTTAAATGTGGCTACGGACCGGCAACACTTGGATATTCAAAGGGAAGAGATCTCTTCTTTTGCTGC
GGCCAAAGATATCCATGTGGATAAATGGGTCATGGAAGTATCCGGAGAGAAAGCGAAACAGCCGGGACCAAAGTTAAAAC
TTGTTCTCGAACGCTTGAAGAAAGGGGATGCCTTGATCGTATCGGATATTACCCGTTTGTGTCTTACCTTATATGAGTTG
ATGGGGATACTTACCGTTTGCATGGAGAAGGACGTGACGGTCTATTGTATAAACGACCGTTATATATTCGATGACCGGAT
GGATCGCCAATTGATGATTAATGTCTTCAAGCAAGTAGACGAGATTGATCACAGTCTGGTTTCCATACGTACAAAAGACG
CCTTGGAACAGGTGAAAAGTACGGGAAAGCGGTTGGGACGTCCTAAAGGCTCGGAATCCAAGTTGTTCTTCTTGGATGCC
CATAAGGGGGAGATCATGAACATGTTGGAGCGGGGAGAATCGGTAGGATCGATTTGCGAGCATTTCAACGTCTCTAAGAA
TACTTTTTATAAGTATAGGAAGAAATTCTTCAGATCGTAA

Upstream 100 bases:

>100_bases
ATAAACGCAAATGTACGAAATAAAGCGTTAAACATCCCATAATCTTGAAGATATACTCATTCTTTTTGTACCTTCACGCT
AGAAACAATTAGTGAAATTT

Downstream 100 bases:

>100_bases
GGATTGGTTTTAATACCAATCCTTTCGTTTCATATATAGCCAAGTCAATACTCCGGTAGCTATCATGACGGCCCAAGCGA
TGAAATAACCGTAACGCCAA

Product: serine type site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTIAYLNVATDRQHLDIQREEISSFAAAKDIHVDKWVMEVSGEKAKQPGPKLKLVLERLKKGDALIVSDITRLCLTLYEL
MGILTVCMEKDVTVYCINDRYIFDDRMDRQLMINVFKQVDEIDHSLVSIRTKDALEQVKSTGKRLGRPKGSESKLFFLDA
HKGEIMNMLERGESVGSICEHFNVSKNTFYKYRKKFFRS

Sequences:

>Translated_199_residues
MTIAYLNVATDRQHLDIQREEISSFAAAKDIHVDKWVMEVSGEKAKQPGPKLKLVLERLKKGDALIVSDITRLCLTLYEL
MGILTVCMEKDVTVYCINDRYIFDDRMDRQLMINVFKQVDEIDHSLVSIRTKDALEQVKSTGKRLGRPKGSESKLFFLDA
HKGEIMNMLERGESVGSICEHFNVSKNTFYKYRKKFFRS
>Mature_198_residues
TIAYLNVATDRQHLDIQREEISSFAAAKDIHVDKWVMEVSGEKAKQPGPKLKLVLERLKKGDALIVSDITRLCLTLYELM
GILTVCMEKDVTVYCINDRYIFDDRMDRQLMINVFKQVDEIDHSLVSIRTKDALEQVKSTGKRLGRPKGSESKLFFLDAH
KGEIMNMLERGESVGSICEHFNVSKNTFYKYRKKFFRS

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787827, Length=194, Percent_Identity=26.8041237113402, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787638, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 23002; Mature: 22871

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAYLNVATDRQHLDIQREEISSFAAAKDIHVDKWVMEVSGEKAKQPGPKLKLVLERLK
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KGDALIVSDITRLCLTLYELMGILTVCMEKDVTVYCINDRYIFDDRMDRQLMINVFKQVD
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHHHHHH
EIDHSLVSIRTKDALEQVKSTGKRLGRPKGSESKLFFLDAHKGEIMNMLERGESVGSICE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHH
HFNVSKNTFYKYRKKFFRS
HCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIAYLNVATDRQHLDIQREEISSFAAAKDIHVDKWVMEVSGEKAKQPGPKLKLVLERLK
EEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KGDALIVSDITRLCLTLYELMGILTVCMEKDVTVYCINDRYIFDDRMDRQLMINVFKQVD
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHHHHHH
EIDHSLVSIRTKDALEQVKSTGKRLGRPKGSESKLFFLDAHKGEIMNMLERGESVGSICE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHH
HFNVSKNTFYKYRKKFFRS
HCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]