| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is pcrA [H]
Identifier: 150007586
GI number: 150007586
Start: 1087220
End: 1089562
Strand: Direct
Name: pcrA [H]
Synonym: BDI_0939
Alternate gene names: 150007586
Gene position: 1087220-1089562 (Clockwise)
Preceding gene: 150007584
Following gene: 150007587
Centisome position: 22.6
GC content: 50.41
Gene sequence:
>2343_bases ATGAATGTGGAAGAGTATTTGAATCAACTGAATGAGAGCCAGCGGGAAGCGGTGGTTTACAATGAGGGGCCATCCTTGGT CGTGGCCGGGGCTGGCTCCGGTAAGACAAGGGTACTGACCTATAAGATCGCTTATTTATTGCAATTGGGATTGCCTCCCT ATAGTATCTTGGCGCTGACCTTTACCAATAAGGCGGCCCGGGAGATGAAAGAGCGTATTGCGGCCATCACCGGTGACCAA ACGGCCCGTCGGCTATGGATGGGAACGTTCCATTCCATCTTCTCCCGTATTTTACGGAACGAGGCGGAGCATATCGGTTA TCCTTCCAATTTCACGATTTATGACGCCACTGATTCCAAGAGCTTACTGAAATCCATCATCAAGGAAATGCAATTGGACG ATAAGGTGTACCGCCTAGGAATGGTGCAGAGCCGGATCTCCAATGCGAAGAACTCCTTGATAACTTATACGGCCTACGAG CAAAATAAAGAGCTCGTGGAAAGCGATATGAACGCCAAGGTCCCCTTGCTCCGGGAAATCTACAAACGTTACCAGAGCCG TTGCCTGCAAGCGGGAGCGATGGATTTCGACGACTTGTTGCTGCAAACCAATATCCTGTTCCGGGATCATCCGGCCGTCT TGGAGAAATACCGGAACTTCTTCCGGTATGTATTGGTGGATGAGTATCAAGATACGAACTTCGCCCAACACTTGATCGTG CAACGGCTTTGCGAGAGACACGGCCATATCTGCGTGGTAGGGGATGACGCCCAGAGCATCTATTCCTTCCGAGGCGCTAA TATAGATAATATCCTGCAATTCAAGAATCTTTATACCGGTTGCCGTATCTTCAAGCTGGAACGGAATTACCGTTCCACCC AGAATATCGTGAACGCTGCCAATAGCTTGATCGACAAGAATACACGTCAGATACCCAAAACGGTCTATTCCGAGAAAGAG GCGGGCAACAAGGTGAGTGTTTTCACCTCGTACTCCGATTATGAGGAGGGCTACACCGTAGCCGCCCGAATCAACGAGAT GCACGGGATATTAGGGAAATTCTCGTATGCTGATTTCGCTATCTTGTATCGTACCAACGCCCAGTCCCGTATCTTGGAAG AGGCGTTGCGAAAGCGGGGCATCCCTTACAAGATTTACGGCGGTTTGTCTTTTTACCAGCGGAAAGAGATCAAGGACGTG ATCTCTTACTTCCGCCTGATCGTGAACCCGCACGACGAGGAGGCCTTGAAGCGAATCATCAATTATCCCACCCGGGGAAT CGGGGATACGACGGTAGGTAAGCTTGTTGGCGCCGCTACTGAATACGGGGTAAGTCTATGGACCGTGCTTCAAGCCCCCT TGGAATATTCGCTACCGATAAATAATGGTACAGCTAAGAAACTGAGCGATTTCCGTAGTTTGATTGAAGTTTTCATTGAA GAGAATAAAAAACTCTCCGCAGAGGAATTGGCTACCTTGGTGGTGAAGCGTAGCGGCATCGTTTCCGACCTGTTTCAAGA CCGTTCCGTAGAGGGCGTGAGCAAGCAAGAGAACTTGCAGGAGTTGCTGAAAGGTATCGCTGAGTTTTGCGAGATCCGGC GTGAGGAGGGCATGGAGCAAGTCGCCATGTCCGACTTCTTGGCGGAGGTATCCTTGCTCACCGATCAAGATAACGATAAA GAGGAAAACTCCGATAAGGTCACGATGATGACCGTACATGCCGCCAAGGGATTGGAATTCACGAATGTTTTCGTGGTAGG CTTGGAGGAAGACCTATTCCCCTCGTCCCTGTCGAAAGATAACCCGAGAGCGGTAGAGGAGGAGCGTCGTTTGTTCTACG TGGCGATTACCCGTGCGGAGCAAAATTGCGTATTGAGCTATGCGAAGAGCCGCTATCGTAATGGGAAGACGGATATGTGT ACGCCCAGCCGTTTCTTGAAGGATATAGACGCTAAGTATCTGGATATGCCTTCGGATGCCGGCGCTTCAGATGCATTCGC CTCGGCCCGTGAACGCTACGGGCGCCCGGCTTTTGCCTCTCCATTCCGGCAACCAAGGGCGGTTGAGGATGATTTCGTGT CGCCGGTGAAGCAAGCGGCACAGCGTCAAGGGCATCTTACGAAGTTAAAAAACACGATGGAATCGTCCTTTTCGGCGGCT CCAGCCACAGATCTATCGGGGTTACATGTGGGTTCCAAGGTTCGCCATGATCGTTTTGGGGAAGGTGAGATTGTCTCGAT AGAAGGAGAGGGTGGTAACGCAAAGGCTACAGTGGCCTTCGATCATTTCGGACAAAAGCAGTTACTTTTGAAGTTCGCTA AACTCACTATGTTGAATGATTGA
Upstream 100 bases:
>100_bases CTACTGATTATATGTAGGCAAATGTATATATTATCGGCGACCTGCCCAACTTTTTTATGTGGAATCGCTTATTTTCCCTA ATTTTGTATCCCTAAAACGG
Downstream 100 bases:
>100_bases CGGTTAGCTTATGGCATGTCTGGGCATGCTACGAGCCGCATCGTATTTCGCACCGCATTTCGCACTACGTTTCGAATGAC CAAGGTGTTGGTTTTTAGTT
Product: putative helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 780; Mature: 780
Protein sequence:
>780_residues MNVEEYLNQLNESQREAVVYNEGPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFTNKAAREMKERIAAITGDQ TARRLWMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEMQLDDKVYRLGMVQSRISNAKNSLITYTAYE QNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFDDLLLQTNILFRDHPAVLEKYRNFFRYVLVDEYQDTNFAQHLIV QRLCERHGHICVVGDDAQSIYSFRGANIDNILQFKNLYTGCRIFKLERNYRSTQNIVNAANSLIDKNTRQIPKTVYSEKE AGNKVSVFTSYSDYEEGYTVAARINEMHGILGKFSYADFAILYRTNAQSRILEEALRKRGIPYKIYGGLSFYQRKEIKDV ISYFRLIVNPHDEEALKRIINYPTRGIGDTTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIE ENKKLSAEELATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAEVSLLTDQDNDK EENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNPRAVEEERRLFYVAITRAEQNCVLSYAKSRYRNGKTDMC TPSRFLKDIDAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDDFVSPVKQAAQRQGHLTKLKNTMESSFSAA PATDLSGLHVGSKVRHDRFGEGEIVSIEGEGGNAKATVAFDHFGQKQLLLKFAKLTMLND
Sequences:
>Translated_780_residues MNVEEYLNQLNESQREAVVYNEGPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFTNKAAREMKERIAAITGDQ TARRLWMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEMQLDDKVYRLGMVQSRISNAKNSLITYTAYE QNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFDDLLLQTNILFRDHPAVLEKYRNFFRYVLVDEYQDTNFAQHLIV QRLCERHGHICVVGDDAQSIYSFRGANIDNILQFKNLYTGCRIFKLERNYRSTQNIVNAANSLIDKNTRQIPKTVYSEKE AGNKVSVFTSYSDYEEGYTVAARINEMHGILGKFSYADFAILYRTNAQSRILEEALRKRGIPYKIYGGLSFYQRKEIKDV ISYFRLIVNPHDEEALKRIINYPTRGIGDTTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIE ENKKLSAEELATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAEVSLLTDQDNDK EENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNPRAVEEERRLFYVAITRAEQNCVLSYAKSRYRNGKTDMC TPSRFLKDIDAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDDFVSPVKQAAQRQGHLTKLKNTMESSFSAA PATDLSGLHVGSKVRHDRFGEGEIVSIEGEGGNAKATVAFDHFGQKQLLLKFAKLTMLND >Mature_780_residues MNVEEYLNQLNESQREAVVYNEGPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFTNKAAREMKERIAAITGDQ TARRLWMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEMQLDDKVYRLGMVQSRISNAKNSLITYTAYE QNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFDDLLLQTNILFRDHPAVLEKYRNFFRYVLVDEYQDTNFAQHLIV QRLCERHGHICVVGDDAQSIYSFRGANIDNILQFKNLYTGCRIFKLERNYRSTQNIVNAANSLIDKNTRQIPKTVYSEKE AGNKVSVFTSYSDYEEGYTVAARINEMHGILGKFSYADFAILYRTNAQSRILEEALRKRGIPYKIYGGLSFYQRKEIKDV ISYFRLIVNPHDEEALKRIINYPTRGIGDTTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIE ENKKLSAEELATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAEVSLLTDQDNDK EENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNPRAVEEERRLFYVAITRAEQNCVLSYAKSRYRNGKTDMC TPSRFLKDIDAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDDFVSPVKQAAQRQGHLTKLKNTMESSFSAA PATDLSGLHVGSKVRHDRFGEGEIVSIEGEGGNAKATVAFDHFGQKQLLLKFAKLTMLND
Specific function: Essential helicase [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=776, Percent_Identity=36.340206185567, Blast_Score=480, Evalue=1e-136, Organism=Escherichia coli, GI48994965, Length=664, Percent_Identity=36.144578313253, Blast_Score=366, Evalue=1e-102, Organism=Saccharomyces cerevisiae, GI6322369, Length=753, Percent_Identity=28.2868525896414, Blast_Score=196, Evalue=1e-50, Organism=Saccharomyces cerevisiae, GI6324477, Length=680, Percent_Identity=23.3823529411765, Blast_Score=125, Evalue=2e-29,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 88328; Mature: 88328
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVEEYLNQLNESQREAVVYNEGPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALT CCHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEE FTNKAAREMKERIAAITGDQTARRLWMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSK ECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH SLLKSIIKEMQLDDKVYRLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCHHHHHCCCCCCCHHHHHH YKRYQSRCLQAGAMDFDDLLLQTNILFRDHPAVLEKYRNFFRYVLVDEYQDTNFAQHLIV HHHHHHHHHHHCCCCHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH QRLCERHGHICVVGDDAQSIYSFRGANIDNILQFKNLYTGCRIFKLERNYRSTQNIVNAA HHHHHHCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHH NSLIDKNTRQIPKTVYSEKEAGNKVSVFTSYSDYEEGYTVAARINEMHGILGKFSYADFA HHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCCEE ILYRTNAQSRILEEALRKRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRII EEEECCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH NYPTRGIGDTTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH ENKKLSAEELATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQ CCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH VAMSDFLAEVSLLTDQDNDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKD HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHCCCEEEEEEEEECCCCCCCCCCCCC NPRAVEEERRLFYVAITRAEQNCVLSYAKSRYRNGKTDMCTPSRFLKDIDAKYLDMPSDA CCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHCCCCCCC GASDAFASARERYGRPAFASPFRQPRAVEDDFVSPVKQAAQRQGHLTKLKNTMESSFSAA CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC PATDLSGLHVGSKVRHDRFGEGEIVSIEGEGGNAKATVAFDHFGQKQLLLKFAKLTMLND CCCCCCCCCCCCHHCCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MNVEEYLNQLNESQREAVVYNEGPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALT CCHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEE FTNKAAREMKERIAAITGDQTARRLWMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSK ECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH SLLKSIIKEMQLDDKVYRLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCHHHHHCCCCCCCHHHHHH YKRYQSRCLQAGAMDFDDLLLQTNILFRDHPAVLEKYRNFFRYVLVDEYQDTNFAQHLIV HHHHHHHHHHHCCCCHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH QRLCERHGHICVVGDDAQSIYSFRGANIDNILQFKNLYTGCRIFKLERNYRSTQNIVNAA HHHHHHCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHH NSLIDKNTRQIPKTVYSEKEAGNKVSVFTSYSDYEEGYTVAARINEMHGILGKFSYADFA HHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCCEE ILYRTNAQSRILEEALRKRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRII EEEECCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH NYPTRGIGDTTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH ENKKLSAEELATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQ CCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH VAMSDFLAEVSLLTDQDNDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKD HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHCCCEEEEEEEEECCCCCCCCCCCCC NPRAVEEERRLFYVAITRAEQNCVLSYAKSRYRNGKTDMCTPSRFLKDIDAKYLDMPSDA CCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHCCCCCCC GASDAFASARERYGRPAFASPFRQPRAVEDDFVSPVKQAAQRQGHLTKLKNTMESSFSAA CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC PATDLSGLHVGSKVRHDRFGEGEIVSIEGEGGNAKATVAFDHFGQKQLLLKFAKLTMLND CCCCCCCCCCCCHHCCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA