| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is rbpE [H]
Identifier: 150007582
GI number: 150007582
Start: 1082937
End: 1083308
Strand: Direct
Name: rbpE [H]
Synonym: BDI_0935
Alternate gene names: 150007582
Gene position: 1082937-1083308 (Clockwise)
Preceding gene: 150007581
Following gene: 150007584
Centisome position: 22.51
GC content: 44.09
Gene sequence:
>372_bases ATGAATCTTTACATTTCAAATCTAAGTTACAACATCTCTGATGAGGACTTAAGACTGTTATTTGCTGATTACGGTGAGAT TACTTCAGCAAAAGTTATTATGGATAGAGAAACTGGCCGTTCAAGAGGCTTCGGTTTCGTTGAGCTGAGCGATGATGAGC TAGCTAAAAAGGCTATCGAGGAGTTAAACCAAGCAAGTTATGACGGCAAAGTCATCAATATAACAGAAGCCAGACCTAGA GAGGATAGAGGCGACAGAGGTGGTCGTTTCAATAACAACAGAGGTGGCGGCTACGGTTCCAACAGAGGCGGTGGCTATGG CTCTAACAGAGGTGGCGGTTATGGTTCTAACCGGGACGGTGGAAGATATTAA
Upstream 100 bases:
>100_bases AGTTAGTATTAGAAAGTATTTGCTCACAACTTGATTTGTTAGGTAAACTTTTTTAGTCGACATACTCAGCTCAATTAACC ATTTAATTAAAGTTTACAAA
Downstream 100 bases:
>100_bases TTCTATCTAGATAAAAATGGAAGAGCGATCAGAGATGGTCGCTCTTTTTTATTTCAAGCACATAGGCTCGTCCACGGTCT GTCGTGATCTTTAGGTTACT
Product: putative RNA-binding protein rbpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 123
Protein sequence:
>123_residues MNLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARPR EDRGDRGGRFNNNRGGGYGSNRGGGYGSNRGGGYGSNRDGGRY
Sequences:
>Translated_123_residues MNLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARPR EDRGDRGGRFNNNRGGGYGSNRGGGYGSNRGGGYGSNRDGGRY >Mature_123_residues MNLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARPR EDRGDRGGRFNNNRGGGYGSNRGGGYGSNRGGGYGSNRDGGRY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=42.6829268292683, Blast_Score=76, Evalue=7e-15, Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=42.6829268292683, Blast_Score=75, Evalue=9e-15, Organism=Homo sapiens, GI46367787, Length=83, Percent_Identity=46.9879518072289, Blast_Score=69, Evalue=8e-13, Organism=Homo sapiens, GI45238849, Length=83, Percent_Identity=46.9879518072289, Blast_Score=69, Evalue=9e-13, Organism=Homo sapiens, GI208431836, Length=83, Percent_Identity=46.9879518072289, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI4504715, Length=83, Percent_Identity=46.9879518072289, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI208431833, Length=83, Percent_Identity=46.9879518072289, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI4502847, Length=89, Percent_Identity=40.4494382022472, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI18201888, Length=82, Percent_Identity=41.4634146341463, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI116734696, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI185135971, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI116734694, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI116734698, Length=82, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI283945537, Length=78, Percent_Identity=42.3076923076923, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI283945529, Length=78, Percent_Identity=42.3076923076923, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI115511032, Length=78, Percent_Identity=42.3076923076923, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI221316773, Length=78, Percent_Identity=42.3076923076923, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI221316771, Length=78, Percent_Identity=42.3076923076923, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI221316767, Length=78, Percent_Identity=42.3076923076923, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI221316769, Length=78, Percent_Identity=42.3076923076923, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI291084655, Length=82, Percent_Identity=40.2439024390244, Blast_Score=63, Evalue=6e-11, Organism=Homo sapiens, GI221316765, Length=78, Percent_Identity=42.3076923076923, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=32.4675324675325, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=35.0649350649351, Blast_Score=66, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567133, Length=83, Percent_Identity=40.9638554216867, Blast_Score=66, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567131, Length=83, Percent_Identity=40.9638554216867, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=30, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71993217, Length=83, Percent_Identity=43.3734939759036, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71993203, Length=83, Percent_Identity=43.3734939759036, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71993209, Length=83, Percent_Identity=43.3734939759036, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=34.2105263157895, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17532863, Length=82, Percent_Identity=37.8048780487805, Blast_Score=63, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6321013, Length=83, Percent_Identity=46.9879518072289, Blast_Score=64, Evalue=9e-12, Organism=Drosophila melanogaster, GI24582417, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI45550943, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582419, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582423, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582421, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI19920866, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582412, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24654797, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI45552715, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654810, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654800, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654793, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654807, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136378, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654804, Length=83, Percent_Identity=44.578313253012, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=31.7073170731707, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 13518; Mature: 13518
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIE CEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHH ELNQASYDGKVINITEARPREDRGDRGGRFNNNRGGGYGSNRGGGYGSNRGGGYGSNRDG HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRY CCC >Mature Secondary Structure MNLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIE CEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHH ELNQASYDGKVINITEARPREDRGDRGGRFNNNRGGGYGSNRGGGYGSNRGGGYGSNRDG HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRY CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]