| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is chuR [H]
Identifier: 150007567
GI number: 150007567
Start: 1056032
End: 1057273
Strand: Reverse
Name: chuR [H]
Synonym: BDI_0920
Alternate gene names: 150007567
Gene position: 1057273-1056032 (Counterclockwise)
Preceding gene: 150007568
Following gene: 150007566
Centisome position: 21.97
GC content: 45.97
Gene sequence:
>1242_bases ATGAATAGTTCCTATATTTCCCCTTTCGCTAAGCCGGTCTACATCATGTTGAAACCGGTTGGTTCTGTTTGTAATTTGGC ATGCGAGTATTGTTATTACCTTGAGAAAAGCAAGTTCTATCCGGATGTAAAGAATCACATCATGACAGACCAGATACTCG AGAAGTTCATCAAGGAATACATGGAATGCCAGACCATGCAAGAAGTCTTGTTTACATGGCATGGAGGTGAGACGCTGATG CGGCCTATCAGCTTCTATAAAAAAGCCTTGGAGTTGCAGCGTAAATATGCGGGAGGACGGCAAATAGACAACTGTATCCA AACCAATGGTACCCTATTGAATGATGAGTGGTGCCAATTTTTCAAGGAAAATAATTTCTTGGTGGGTGTATCTATCGATG GCCCGCAAGAGTTCCACGACGAATACCGTAGGAACCGGCAGAGACTCCCCTCTTTCTATAAGGTGATGAAGGGAATCGAG TTGCTGAAAAAACATGGGGTAGAATATAACGCCATGGCCGTCGTGAATGACTATAACGTGGATTATCCGCTGGAATTCTA TAATTTCTTCAAGGAACTGGATTGCCGTTTCATCCAATTCGCCCCGATCGTGGAGCGTATCGGCCGGCACAAGGAAGGCA CCAAGCTATCTTCTCCCGAGGAGCAAGACGCAGCGATCGAGCTAGCTCCGTTCTCGGTAGATAGCGAGAAATGGGGGGAT TTCCTTTGCGCCTTGTTCGACGAGTGGCTGAAAGAGGATGTCGGCAAGTTCTACATCCAATTATTCGATTCCACCTTGGC GAACTGGGTAGGCGAACAACCCGGGGTCTGCTCCTTGGCCCGCCATTGCGGTCACGCCGGGGTAATGGAGTTCAATGGCG ACGTATATGCTTGCGACCATTTCGTATTCCCGGAATACAAACTCGGGAATATCCAAACAAAGACATTAACGGAGATGATG TACAGTCCGGTACAACAAAAGTTTGGAACGGATAAAGAAGATAAGCTCCCTACGCAATGCAAGGAATGCGAATATCTTTT CGCTTGCCATGGAGAGTGCCCGAAAAACCGGTTTCTCCATACGCCGAATGGGGAGCCGGGACTAAATTATCTATGTAAGG GATACAAGAAATTCTTCAAGCATGTAGCTCCTTACATGGATTTTATGAAAAAAGAGTTATTGAATCAACGTCCACCCGCA AACGTGATGGATTGGGCTAAACAACAACAACATGAATATTAA
Upstream 100 bases:
>100_bases TACACTGACTAAGTCCGATCAAACGTTCAGCGAACTAAAACAAAAAATTGTACTTAGCGAGTTCGAGTTGAAATAGAAAT GTAACATCTAATAATATACC
Downstream 100 bases:
>100_bases CAGACGTGATTTCATTAAAACAGGAGGTATGGTTATGCTTGGAACATTAGCGGCTCCTTCCTTACTAGGAAGTTGCACCG GTAGTGAGGGGGATAAAGCA
Product: anaerobic sulfatase-maturase
Products: NA
Alternate protein names: AnSME; Chondroitin sulfate/heparin utilization regulation protein; Ser-type sulfatase-activating enzyme [H]
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MNSSYISPFAKPVYIMLKPVGSVCNLACEYCYYLEKSKFYPDVKNHIMTDQILEKFIKEYMECQTMQEVLFTWHGGETLM RPISFYKKALELQRKYAGGRQIDNCIQTNGTLLNDEWCQFFKENNFLVGVSIDGPQEFHDEYRRNRQRLPSFYKVMKGIE LLKKHGVEYNAMAVVNDYNVDYPLEFYNFFKELDCRFIQFAPIVERIGRHKEGTKLSSPEEQDAAIELAPFSVDSEKWGD FLCALFDEWLKEDVGKFYIQLFDSTLANWVGEQPGVCSLARHCGHAGVMEFNGDVYACDHFVFPEYKLGNIQTKTLTEMM YSPVQQKFGTDKEDKLPTQCKECEYLFACHGECPKNRFLHTPNGEPGLNYLCKGYKKFFKHVAPYMDFMKKELLNQRPPA NVMDWAKQQQHEY
Sequences:
>Translated_413_residues MNSSYISPFAKPVYIMLKPVGSVCNLACEYCYYLEKSKFYPDVKNHIMTDQILEKFIKEYMECQTMQEVLFTWHGGETLM RPISFYKKALELQRKYAGGRQIDNCIQTNGTLLNDEWCQFFKENNFLVGVSIDGPQEFHDEYRRNRQRLPSFYKVMKGIE LLKKHGVEYNAMAVVNDYNVDYPLEFYNFFKELDCRFIQFAPIVERIGRHKEGTKLSSPEEQDAAIELAPFSVDSEKWGD FLCALFDEWLKEDVGKFYIQLFDSTLANWVGEQPGVCSLARHCGHAGVMEFNGDVYACDHFVFPEYKLGNIQTKTLTEMM YSPVQQKFGTDKEDKLPTQCKECEYLFACHGECPKNRFLHTPNGEPGLNYLCKGYKKFFKHVAPYMDFMKKELLNQRPPA NVMDWAKQQQHEY >Mature_413_residues MNSSYISPFAKPVYIMLKPVGSVCNLACEYCYYLEKSKFYPDVKNHIMTDQILEKFIKEYMECQTMQEVLFTWHGGETLM RPISFYKKALELQRKYAGGRQIDNCIQTNGTLLNDEWCQFFKENNFLVGVSIDGPQEFHDEYRRNRQRLPSFYKVMKGIE LLKKHGVEYNAMAVVNDYNVDYPLEFYNFFKELDCRFIQFAPIVERIGRHKEGTKLSSPEEQDAAIELAPFSVDSEKWGD FLCALFDEWLKEDVGKFYIQLFDSTLANWVGEQPGVCSLARHCGHAGVMEFNGDVYACDHFVFPEYKLGNIQTKTLTEMM YSPVQQKFGTDKEDKLPTQCKECEYLFACHGECPKNRFLHTPNGEPGLNYLCKGYKKFFKHVAPYMDFMKKELLNQRPPA NVMDWAKQQQHEY
Specific function: Involved in 'Ser-type' sulfatase maturation under anaerobic conditions. Links the heparin and the chondroitin sulfate utilization pathways which contribute to the colonization of the intestinal tract. May catalyze the activation of chondro-6- sulfatase, i
COG id: COG0641
COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]
Homologues:
Organism=Escherichia coli, GI48994973, Length=398, Percent_Identity=44.9748743718593, Blast_Score=384, Evalue=1e-108, Organism=Escherichia coli, GI87081923, Length=400, Percent_Identity=39.5, Blast_Score=308, Evalue=5e-85,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 48355; Mature: 48355
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSSYISPFAKPVYIMLKPVGSVCNLACEYCYYLEKSKFYPDVKNHIMTDQILEKFIKEY CCCCCCCCHHCCHHHEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH MECQTMQEVLFTWHGGETLMRPISFYKKALELQRKYAGGRQIDNCIQTNGTLLNDEWCQF HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECHHHHHH FKENNFLVGVSIDGPQEFHDEYRRNRQRLPSFYKVMKGIELLKKHGVEYNAMAVVNDYNV HHCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC DYPLEFYNFFKELDCRFIQFAPIVERIGRHKEGTKLSSPEEQDAAIELAPFSVDSEKWGD CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH FLCALFDEWLKEDVGKFYIQLFDSTLANWVGEQPGVCSLARHCGHAGVMEFNGDVYACDH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECCCEEEECC FVFPEYKLGNIQTKTLTEMMYSPVQQKFGTDKEDKLPTQCKECEYLFACHGECPKNRFLH EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCEE TPNGEPGLNYLCKGYKKFFKHVAPYMDFMKKELLNQRPPANVMDWAKQQQHEY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MNSSYISPFAKPVYIMLKPVGSVCNLACEYCYYLEKSKFYPDVKNHIMTDQILEKFIKEY CCCCCCCCHHCCHHHEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH MECQTMQEVLFTWHGGETLMRPISFYKKALELQRKYAGGRQIDNCIQTNGTLLNDEWCQF HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECHHHHHH FKENNFLVGVSIDGPQEFHDEYRRNRQRLPSFYKVMKGIELLKKHGVEYNAMAVVNDYNV HHCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC DYPLEFYNFFKELDCRFIQFAPIVERIGRHKEGTKLSSPEEQDAAIELAPFSVDSEKWGD CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH FLCALFDEWLKEDVGKFYIQLFDSTLANWVGEQPGVCSLARHCGHAGVMEFNGDVYACDH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECCCEEEECC FVFPEYKLGNIQTKTLTEMMYSPVQQKFGTDKEDKLPTQCKECEYLFACHGECPKNRFLH EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCEE TPNGEPGLNYLCKGYKKFFKHVAPYMDFMKKELLNQRPPANVMDWAKQQQHEY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1429442; 12663928 [H]