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The map label for this gene is rnfD [H]

Identifier: 150007169

GI number: 150007169

Start: 606183

End: 607151

Strand: Reverse

Name: rnfD [H]

Synonym: BDI_0514

Alternate gene names: 150007169

Gene position: 607151-606183 (Counterclockwise)

Preceding gene: 150007170

Following gene: 150007168

Centisome position: 12.62

GC content: 49.64

Gene sequence:

>969_bases
ATGGAAAATAATTTATACGTATCGCCCTCGCCCCACATCCATGGAGGCGACAGCATAAGCAAAAATATGTATGGTGTACT
GATTGCCCTTATCCCGGCTTTCTTGGTATCCCTTTATTTCTTCGGTCTGGGAGCGTTGATCGTTACGGTCGTATCGGTTC
TGGCCTGTATGATATTCGAGTATTTGATCCAGCGATTCCTGATGAAAAAGGAACCGACCCTTTGCGATGGCTCCGCTATC
CTGACGGGCGTATTGCTGGCCTTCAACCTACCTTCCAACCTTCCGGTCTGGATCATTATCATCGGAGCGTTGGCGGCGAT
CGGCATCGGCAAGATGTCTTTCGGTGGATTAGGTAATAATATTTTCAATCCGGCGTTGGTCGGACGTGTATTCTTATTGA
TCTCCTTCCCGGCGCAGATGACGACTTGGCCGGTGGTAGATGCCTTGAACGTTTTCCCGATGACTTATACGGACGCCCAG
ACCGGTGCGACGGTACTGTCGTTGATGAACGAGGGCGTGACCGAGCTTCCGTCTTACGGGAATATGCTTGTAGGGGCTAT
GGGAGGTAGTCTCGGTGAAGTGAGCGCCGTGGCCTTGATCCTCGGTCTTTTATTCATGCTATGGAAAAAGATCATCACTT
GGCAGATCCCGGTATCCATCTTGGCTACCGTATTCGTATTCACGGGCATCATGCACTTGGTGAATCCGGTACAATACGCC
AGCCCGTTCGTTCATTTATTATCCGGTGGTTTGTTATTAGGCTCCATCTTTATGGCGACCGACTACGTAACCTCGCCGAT
GAGCAAGAACGGAATGCTTGTCTACGGCGTGGGAATCGGAATCCTTACCACGGTGATCCGTTTGTTCGGGTCTTACCCGG
AAGGTATGTCGTTCGCTATCCTGATCATGAACGCATTTACTCCGCTAATCAACAGCTATATCAAACCTAAACATTTCGGA
GGAAAGTAA

Upstream 100 bases:

>100_bases
TACCTGTCCGGCCAACCGTCCGTTGCTGGATCAGATCCGGTTGGGTAAAGGAAAAGTTATGGGTATTATCCGGTCTAGAA
AGTCATAAAACAAGAGCAAC

Downstream 100 bases:

>100_bases
GCATGGCAAAATTAAAATCAACATTACCCAATATGCTCCTTTCACTAACAGGCATTTGCTTGGTAGCAGGGGCGATCCTA
GCCGGAGTGAACCAGTTTAC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MENNLYVSPSPHIHGGDSISKNMYGVLIALIPAFLVSLYFFGLGALIVTVVSVLACMIFEYLIQRFLMKKEPTLCDGSAI
LTGVLLAFNLPSNLPVWIIIIGALAAIGIGKMSFGGLGNNIFNPALVGRVFLLISFPAQMTTWPVVDALNVFPMTYTDAQ
TGATVLSLMNEGVTELPSYGNMLVGAMGGSLGEVSAVALILGLLFMLWKKIITWQIPVSILATVFVFTGIMHLVNPVQYA
SPFVHLLSGGLLLGSIFMATDYVTSPMSKNGMLVYGVGIGILTTVIRLFGSYPEGMSFAILIMNAFTPLINSYIKPKHFG
GK

Sequences:

>Translated_322_residues
MENNLYVSPSPHIHGGDSISKNMYGVLIALIPAFLVSLYFFGLGALIVTVVSVLACMIFEYLIQRFLMKKEPTLCDGSAI
LTGVLLAFNLPSNLPVWIIIIGALAAIGIGKMSFGGLGNNIFNPALVGRVFLLISFPAQMTTWPVVDALNVFPMTYTDAQ
TGATVLSLMNEGVTELPSYGNMLVGAMGGSLGEVSAVALILGLLFMLWKKIITWQIPVSILATVFVFTGIMHLVNPVQYA
SPFVHLLSGGLLLGSIFMATDYVTSPMSKNGMLVYGVGIGILTTVIRLFGSYPEGMSFAILIMNAFTPLINSYIKPKHFG
GK
>Mature_322_residues
MENNLYVSPSPHIHGGDSISKNMYGVLIALIPAFLVSLYFFGLGALIVTVVSVLACMIFEYLIQRFLMKKEPTLCDGSAI
LTGVLLAFNLPSNLPVWIIIIGALAAIGIGKMSFGGLGNNIFNPALVGRVFLLISFPAQMTTWPVVDALNVFPMTYTDAQ
TGATVLSLMNEGVTELPSYGNMLVGAMGGSLGEVSAVALILGLLFMLWKKIITWQIPVSILATVFVFTGIMHLVNPVQYA
SPFVHLLSGGLLLGSIFMATDYVTSPMSKNGMLVYGVGIGILTTVIRLFGSYPEGMSFAILIMNAFTPLINSYIKPKHFG
GK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=34.2857142857143, Blast_Score=197, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34529; Mature: 34529

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNLYVSPSPHIHGGDSISKNMYGVLIALIPAFLVSLYFFGLGALIVTVVSVLACMIFE
CCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLIQRFLMKKEPTLCDGSAILTGVLLAFNLPSNLPVWIIIIGALAAIGIGKMSFGGLGNN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
IFNPALVGRVFLLISFPAQMTTWPVVDALNVFPMTYTDAQTGATVLSLMNEGVTELPSYG
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCHHHCCCCC
NMLVGAMGGSLGEVSAVALILGLLFMLWKKIITWQIPVSILATVFVFTGIMHLVNPVQYA
CEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHH
SPFVHLLSGGLLLGSIFMATDYVTSPMSKNGMLVYGVGIGILTTVIRLFGSYPEGMSFAI
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHH
LIMNAFTPLINSYIKPKHFGGK
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MENNLYVSPSPHIHGGDSISKNMYGVLIALIPAFLVSLYFFGLGALIVTVVSVLACMIFE
CCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLIQRFLMKKEPTLCDGSAILTGVLLAFNLPSNLPVWIIIIGALAAIGIGKMSFGGLGNN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
IFNPALVGRVFLLISFPAQMTTWPVVDALNVFPMTYTDAQTGATVLSLMNEGVTELPSYG
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCHHHCCCCC
NMLVGAMGGSLGEVSAVALILGLLFMLWKKIITWQIPVSILATVFVFTGIMHLVNPVQYA
CEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHH
SPFVHLLSGGLLLGSIFMATDYVTSPMSKNGMLVYGVGIGILTTVIRLFGSYPEGMSFAI
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHH
LIMNAFTPLINSYIKPKHFGGK
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA