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The map label for this gene is rnfA [H]

Identifier: 150007166

GI number: 150007166

Start: 604379

End: 604951

Strand: Reverse

Name: rnfA [H]

Synonym: BDI_0511

Alternate gene names: 150007166

Gene position: 604951-604379 (Counterclockwise)

Preceding gene: 150007167

Following gene: 150007165

Centisome position: 12.57

GC content: 46.42

Gene sequence:

>573_bases
ATGGAATATATATTGATATTTATCGCCGCCGTATTCGTTAATAACGTTGTACTGGCACAGTTCTTGGGAATTTGTCCGTT
CTTGGGGGTATCTAAGAAAGTGGAGACTGCCGCAGGCATGGGAGCCGCCGTTACGTTCGTGCTTACGATCGCCACGATTG
TTACATTCCTCGTGCAAAAATACATATTGGACGCTTTCGGATTAGGGTTCATGCAGACGATCAGTTTCATCTTGATCATC
GCCGCCTTGGTTCAGATGGTGGAAATCATATTGAAGAAGGTCTCTCCCGCCCTTTACCAGGCGTTGGGCGTATTCCTTCC
GTTGATCACCACGAACTGCTGTATCTTGGGTGTGGCGATCCTTGTAATCCAAAAAGAGTATAATTTATTAGAATCTGTGG
TATATGCTATCTCGACCGCTATTGGATTTGCGCTAGCTTTGATTATCTTCGCGGGTATTCGGGAGCAACTAGCCATGACG
CATGTTCCGGAAGGCATGAAAGGCACTCCTATCGCCTTGATAACGGCCGGTTTGCTAGCTATGGCTTTTATGGGATTCTC
GGGTATCGTATAA

Upstream 100 bases:

>100_bases
TGGTTCGCTGATCTTCGTATTGGCTCCGGGAGCGTTTATCGCCTTGGGTTATCTGGTAGCAATAGTAAACAAACTGCGTA
AAGCATAATAAACGGATCAT

Downstream 100 bases:

>100_bases
CAAACTTATCTAAATGAACACTAGAATGAAAAAGAAGATTTTAGTAGCGGGCGGAACCGGTTATATCGGCTCACACACCA
CAGTAGAATTGCAGAACGCC

Product: electron transport complex protein RnfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MEYILIFIAAVFVNNVVLAQFLGICPFLGVSKKVETAAGMGAAVTFVLTIATIVTFLVQKYILDAFGLGFMQTISFILII
AALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAILVIQKEYNLLESVVYAISTAIGFALALIIFAGIREQLAMT
HVPEGMKGTPIALITAGLLAMAFMGFSGIV

Sequences:

>Translated_190_residues
MEYILIFIAAVFVNNVVLAQFLGICPFLGVSKKVETAAGMGAAVTFVLTIATIVTFLVQKYILDAFGLGFMQTISFILII
AALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAILVIQKEYNLLESVVYAISTAIGFALALIIFAGIREQLAMT
HVPEGMKGTPIALITAGLLAMAFMGFSGIV
>Mature_190_residues
MEYILIFIAAVFVNNVVLAQFLGICPFLGVSKKVETAAGMGAAVTFVLTIATIVTFLVQKYILDAFGLGFMQTISFILII
AALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAILVIQKEYNLLESVVYAISTAIGFALALIIFAGIREQLAMT
HVPEGMKGTPIALITAGLLAMAFMGFSGIV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=189, Percent_Identity=54.4973544973545, Blast_Score=220, Evalue=4e-59,
Organism=Escherichia coli, GI1787919, Length=150, Percent_Identity=30, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20240; Mature: 20240

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYILIFIAAVFVNNVVLAQFLGICPFLGVSKKVETAAGMGAAVTFVLTIATIVTFLVQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
YILDAFGLGFMQTISFILIIAALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAI
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LVIQKEYNLLESVVYAISTAIGFALALIIFAGIREQLAMTHVPEGMKGTPIALITAGLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
MAFMGFSGIV
HHHHHHHCCC
>Mature Secondary Structure
MEYILIFIAAVFVNNVVLAQFLGICPFLGVSKKVETAAGMGAAVTFVLTIATIVTFLVQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
YILDAFGLGFMQTISFILIIAALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAI
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LVIQKEYNLLESVVYAISTAIGFALALIIFAGIREQLAMTHVPEGMKGTPIALITAGLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
MAFMGFSGIV
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA