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The map label for this gene is ysgA [H]

Identifier: 150007109

GI number: 150007109

Start: 521326

End: 522093

Strand: Reverse

Name: ysgA [H]

Synonym: BDI_0452

Alternate gene names: 150007109

Gene position: 522093-521326 (Counterclockwise)

Preceding gene: 150007112

Following gene: 150007104

Centisome position: 10.85

GC content: 44.92

Gene sequence:

>768_bases
ATGCTAAGCAAGACCAAAGTCAAATACATCCGTTCTCTGGAATTAAAGAAATTCCGGAATGAAAATAATGTTTTTGTAGC
CGAAGGAAATAAATTGGTAGCCGATATGTTACCGGCCTTTGAATGTGAGTTATTAATAGCCAAGCCATCTTGGATGGCTA
CACAAGGCGATATTCCGGCCAAGGAGTTATTGGTAGCGGAAGAAGATGATATTCGTAAAGCCAGCTTCCTGAAAAATCCC
CAAGATGTACTCGCAATCTTTAAACGCCCCAATTGGGATATAACGGAAATAACGCCGGAAAAGGAGCTTGTTCTCGCATT
AGACGGAATCCAAGATCCGGGCAACTTAGGTACGATCATCCGGTTAGCGGACTGGTTCGGTATTTCCCATATCGTATGCA
GCAAAGATACCGCCGATGTTTTCAGTCCAAAAACCGTACAAGCCACTATGGGTGCGCTCGCCCACGTAAAAATACATTAC
ACCGATCTGGAAACGTTCTTACAGGCCCAATCAGCCCAAGCCATACCTTTATACGGCACCTTCCTTGGCGGAGAAAACTT
ATATGAGAAAACCTTATCCGGAAACGGTATCTTGATAATGGGTAATGAAGGAAATGGAATACGTCCCGCCATAGAGGCTT
TTGTAAACGAAAAATTATATATCCCGAACTATCCGGAAGGAAGAGACACCTCAGAGTCTCTCAATGTGGCCATCGCTACA
GCTGTGGTCTGTGCCGAGTTTCGCAGACGCCAAGGGAATCCCGCTTAA

Upstream 100 bases:

>100_bases
TATACGTAGAGATCGATTCATCATTCCAAGCTTTTTACGATCGCGAATGTACTGGAATTTAAAGAATTTACCGTACTTTT
GTTTTGTAAAAAGAACTAAG

Downstream 100 bases:

>100_bases
ACGATATATATGGACTGAACAACCCGGCGTAATCTTTTCGGTTAACGCCGGCCAAGATCCCATCACCTGCTTAAAACCAA
TCGCCGGTTCCGAGGAAAGA

Product: putative tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLSKTKVKYIRSLELKKFRNENNVFVAEGNKLVADMLPAFECELLIAKPSWMATQGDIPAKELLVAEEDDIRKASFLKNP
QDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHY
TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIAT
AVVCAEFRRRQGNPA

Sequences:

>Translated_255_residues
MLSKTKVKYIRSLELKKFRNENNVFVAEGNKLVADMLPAFECELLIAKPSWMATQGDIPAKELLVAEEDDIRKASFLKNP
QDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHY
TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIAT
AVVCAEFRRRQGNPA
>Mature_255_residues
MLSKTKVKYIRSLELKKFRNENNVFVAEGNKLVADMLPAFECELLIAKPSWMATQGDIPAKELLVAEEDDIRKASFLKNP
QDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHY
TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIAT
AVVCAEFRRRQGNPA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=147, Percent_Identity=29.9319727891156, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1790623, Length=156, Percent_Identity=30.1282051282051, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28183; Mature: 28183

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKTKVKYIRSLELKKFRNENNVFVAEGNKLVADMLPAFECELLIAKPSWMATQGDIPA
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHCCCCEEEEEEECCCCCCCCCCCCH
KELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTII
HHEEEECCCCCHHHHHHCCHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCCHHE
RLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLETFLQAQSAQAIPLYGT
EEHHHHCCEEEEECCCCCHHCCCCHHHHHHCCEEEEEEEEEHHHHHHHHCCCCCCEEEEE
FLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIAT
EECCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHH
AVVCAEFRRRQGNPA
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MLSKTKVKYIRSLELKKFRNENNVFVAEGNKLVADMLPAFECELLIAKPSWMATQGDIPA
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHCCCCEEEEEEECCCCCCCCCCCCH
KELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTII
HHEEEECCCCCHHHHHHCCHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCCHHE
RLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLETFLQAQSAQAIPLYGT
EEHHHHCCEEEEECCCCCHHCCCCHHHHHHCCEEEEEEEEEHHHHHHHHCCCCCCEEEEE
FLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIAT
EECCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHH
AVVCAEFRRRQGNPA
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]