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The map label for this gene is rarD [C]

Identifier: 150006926

GI number: 150006926

Start: 290060

End: 291025

Strand: Reverse

Name: rarD [C]

Synonym: BDI_0262

Alternate gene names: 150006926

Gene position: 291025-290060 (Counterclockwise)

Preceding gene: 150006927

Following gene: 150006925

Centisome position: 6.05

GC content: 48.34

Gene sequence:

>966_bases
ATGATGAATCAAGAAAAGCTAAAAGGGCATCTCCTTATTTTAGCGGCCAACATCCTGTTCGCCATTAATATGCCCGTATC
CAAATATCTACTCCCCGAGCATGTGCAACCCGAGGCGCTGACCAGTATGCGGATGAGCTTCGCTTGCGTGATGTTCTGGA
TCACCTCCCTATTTGTTCCCTATGAGAAAGTGCCGTTGAAGGACTTGGGACTTCTATGCCTTTGCGCCCTTTGCGGAGTA
GGCTTGAACCAAGGGCTTTTTATCTGGGGATTGAATACCACGTCGCCGGTAGACGCTTCCATCATAGCGACCGCCGTCCC
CATCTTTGTCATGATCCTGGCGGCCCTGATCCTAAAGGAACCGATCACACGGATGAAAACGTTCGGGGTACTGCTTGGCA
TATGCGGGGCGATCTCCTTGATACTACAATCCACGCAAGGTTCCAATCAAGCGAGCAGTCTGGGGGGAAACCTGTTGATT
ACGGTTAGCGGATTCATGTACTCGATCTATTTGGTAGTATCCAAACCTCTAACACTCAAGTACTCATCCGTCACGATGAT
GAAATGGATGTTCCTGTTCTCCACGCTGATTACCCTGCCTTTCGCTATCGAATCCATCTGGAATACCCCGGCTTTCCACA
AAGAGGTCTTCGACGGCCAAGAGTTGGGAGCCATCTTCTTCGTGTTATTCGGGGCCACGTTCGTACCTTATTTATTAATA
CCGCTGGCCTTAAAGCGAATCCGCCCGACTACCGTCAGCATGTACAATTATATCCAACCGATCGTAGCTTCCTTTATCGC
CGTATTCATCGGTCAGGATAGTTTTAGCGTAACGAAACTAGTATCGGCCGCACTTGTTTTCTCCGGCGTCTATTTAGTGA
CCCAAAGCAAGAGCCGGGCGGACCTTGAACAACAAAATAGTCAATCTTTTAGCAAAAACGCTTGCAATATGAAAAATAAT
GCGTAA

Upstream 100 bases:

>100_bases
ACTAACGGATCATTTCTTATTTACAAAAAAAAGTAAGACCTTTGCTCACCAAAACATAAGCCTGTATACATTTATATTAT
ACCAATCTAGGATCGTACTT

Downstream 100 bases:

>100_bases
TATTGCCCCCATAATATAAAAGAATAAGCACAATACAAAATCAATGATGAGTGTAGAGTCCTCATATTATACATGGGCAT
TGATGACCCCTTGGGGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MMNQEKLKGHLLILAANILFAINMPVSKYLLPEHVQPEALTSMRMSFACVMFWITSLFVPYEKVPLKDLGLLCLCALCGV
GLNQGLFIWGLNTTSPVDASIIATAVPIFVMILAALILKEPITRMKTFGVLLGICGAISLILQSTQGSNQASSLGGNLLI
TVSGFMYSIYLVVSKPLTLKYSSVTMMKWMFLFSTLITLPFAIESIWNTPAFHKEVFDGQELGAIFFVLFGATFVPYLLI
PLALKRIRPTTVSMYNYIQPIVASFIAVFIGQDSFSVTKLVSAALVFSGVYLVTQSKSRADLEQQNSQSFSKNACNMKNN
A

Sequences:

>Translated_321_residues
MMNQEKLKGHLLILAANILFAINMPVSKYLLPEHVQPEALTSMRMSFACVMFWITSLFVPYEKVPLKDLGLLCLCALCGV
GLNQGLFIWGLNTTSPVDASIIATAVPIFVMILAALILKEPITRMKTFGVLLGICGAISLILQSTQGSNQASSLGGNLLI
TVSGFMYSIYLVVSKPLTLKYSSVTMMKWMFLFSTLITLPFAIESIWNTPAFHKEVFDGQELGAIFFVLFGATFVPYLLI
PLALKRIRPTTVSMYNYIQPIVASFIAVFIGQDSFSVTKLVSAALVFSGVYLVTQSKSRADLEQQNSQSFSKNACNMKNN
A
>Mature_321_residues
MMNQEKLKGHLLILAANILFAINMPVSKYLLPEHVQPEALTSMRMSFACVMFWITSLFVPYEKVPLKDLGLLCLCALCGV
GLNQGLFIWGLNTTSPVDASIIATAVPIFVMILAALILKEPITRMKTFGVLLGICGAISLILQSTQGSNQASSLGGNLLI
TVSGFMYSIYLVVSKPLTLKYSSVTMMKWMFLFSTLITLPFAIESIWNTPAFHKEVFDGQELGAIFFVLFGATFVPYLLI
PLALKRIRPTTVSMYNYIQPIVASFIAVFIGQDSFSVTKLVSAALVFSGVYLVTQSKSRADLEQQNSQSFSKNACNMKNN
A

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35276; Mature: 35276

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNQEKLKGHLLILAANILFAINMPVSKYLLPEHVQPEALTSMRMSFACVMFWITSLFVP
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
YEKVPLKDLGLLCLCALCGVGLNQGLFIWGLNTTSPVDASIIATAVPIFVMILAALILKE
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PITRMKTFGVLLGICGAISLILQSTQGSNQASSLGGNLLITVSGFMYSIYLVVSKPLTLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHCCCCEEE
YSSVTMMKWMFLFSTLITLPFAIESIWNTPAFHKEVFDGQELGAIFFVLFGATFVPYLLI
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
PLALKRIRPTTVSMYNYIQPIVASFIAVFIGQDSFSVTKLVSAALVFSGVYLVTQSKSRA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHEEECCCCHH
DLEQQNSQSFSKNACNMKNNA
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMNQEKLKGHLLILAANILFAINMPVSKYLLPEHVQPEALTSMRMSFACVMFWITSLFVP
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
YEKVPLKDLGLLCLCALCGVGLNQGLFIWGLNTTSPVDASIIATAVPIFVMILAALILKE
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PITRMKTFGVLLGICGAISLILQSTQGSNQASSLGGNLLITVSGFMYSIYLVVSKPLTLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHCCCCEEE
YSSVTMMKWMFLFSTLITLPFAIESIWNTPAFHKEVFDGQELGAIFFVLFGATFVPYLLI
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
PLALKRIRPTTVSMYNYIQPIVASFIAVFIGQDSFSVTKLVSAALVFSGVYLVTQSKSRA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHEEECCCCHH
DLEQQNSQSFSKNACNMKNNA
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]