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The map label for this gene is yqgF [C]

Identifier: 150006542

GI number: 150006542

Start: 4998083

End: 4998502

Strand: Reverse

Name: yqgF [C]

Synonym: BVU_4062

Alternate gene names: 150006542

Gene position: 4998502-4998083 (Counterclockwise)

Preceding gene: 150006546

Following gene: 150006541

Centisome position: 96.81

GC content: 40.71

Gene sequence:

>420_bases
ATGAGTAGAATATTAGCGATAGATTACGGTAAAAAGCGCACAGGTGTGGCTGTGACGGATGTTTTGCAGATTATTGCAAA
CGGGTTGACGACTGTTCCTACACACCAACTACTGGACTTTATTCTGAAATATGTGGAAAAAGAGCCTGTGGAACGCATCA
TTGTGGGGCATCCTAAGCAAATGAATAATCAGGAGTCGGAAAATATGCGTAATATTGTCCCTTTTGTCAATCAACTAAGA
AAAAAAATACCGGATATACCGGTAGAGTTTGTTGACGAGCGGTTTACGTCCGTATTGGCCCACCAAGCCATGTTGGATGG
AGGCTTGAAGAAAAAAGACAGGCAGAACAAAGCCTTGGTTGATGAAATCAGTGCTACGATAATCTTACAGTCTTATTTGG
AGTCGAAGAAATATATTTAA

Upstream 100 bases:

>100_bases
ACGAAATGAATCATTCCTTTTGAAAAAACAGTTGAAAAAGCATATTTTAATCTTTATATATAAAATAGGTATGGAATAAA
TTTGTATTTTTGCAAACTAT

Downstream 100 bases:

>100_bases
TAAATAAAAACAGATTAAGAAAAATGATATTACCTATTTATGTGTACGGACAACCGGTGTTGCGTAAAGAAGCAGAGGAT
ATTACCCCGGATTACCCTAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTHQLLDFILKYVEKEPVERIIVGHPKQMNNQESENMRNIVPFVNQLR
KKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALVDEISATIILQSYLESKKYI

Sequences:

>Translated_139_residues
MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTHQLLDFILKYVEKEPVERIIVGHPKQMNNQESENMRNIVPFVNQLR
KKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALVDEISATIILQSYLESKKYI
>Mature_138_residues
SRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTHQLLDFILKYVEKEPVERIIVGHPKQMNNQESENMRNIVPFVNQLRK
KIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALVDEISATIILQSYLESKKYI

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BACV8 (A6L7K0)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001301286.1
- ProteinModelPortal:   A6L7K0
- SMR:   A6L7K0
- STRING:   A6L7K0
- GeneID:   5305021
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_4062
- NMPDR:   fig|435590.6.peg.3776
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   YEESESM
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15859; Mature: 15728

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ
CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
MNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DEISATIILQSYLESKKYI
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ
CCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
MNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DEISATIILQSYLESKKYI
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA