| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
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The map label for this gene is 150004767
Identifier: 150004767
GI number: 150004767
Start: 2886668
End: 2889301
Strand: Direct
Name: 150004767
Synonym: BVU_2229
Alternate gene names: NA
Gene position: 2886668-2889301 (Clockwise)
Preceding gene: 150004766
Following gene: 150004768
Centisome position: 55.91
GC content: 37.78
Gene sequence:
>2634_bases ATGCTTGTCTGCAAAAAAATACTGATCTTCTGTGCTTTTGCTTGTTGCGGTACTTTATTCGCGCAAAACATACAGAATCC GGTGCTTCCCGGAGTAGCGGATGCCGGTGTGATGAAATATAATGGTAAGTATTATATAGGTGGAGTATTTACCAATGGGG ATTTTTATGTTTCCGACGACTTGGTTCATTGGGGTAAACCTGTTCATGTCGTGACTATGGATAATGGCTGGAGTAAAGGA AGTGGTGCCGGTAATGAGCAGATTCACGCCAATGATATGTTTTGTTTGAATGGTGATTTTCACTTATATTGGTCTGTCAA TTATTGGGGTAAGGATAAGCATGCTGTTCACATTGTACATGCTCAAAGTAAAAATGTGTTGGGGCCCTATATAGAGCCTG ATAAAAAAACTTGGATGGATAATCGCATTGATCCTAAGGTTTTTAAAGATGATGACGGACAATTATATATGTATATGGTG CGTTTTACTGATGGAAATACTATTTGGGGACGTAAAATGAAGAATCCGGCGGAATTTGCCGGAGAACCAGTGTGCTTGTT TGCATCATTGCCGGATACATGGGAGACCATGGATAACAGAGTGGCAGAGGGACCTTGGGTGATGAAATACAGAGACCGAT ACTATTTGATGTATAATGCCAATCATACCTCTACTGAGTGGGGGAATTATCAATTGGGGGTTGCGGAGGCAGACTCACCT TTAAGTTTTCAAAATGGGAATAAATATAGCTATCCGGTAGTAAATTCTAATCAAATTCTACTGGAAGAGAATTATGTGGA TCTTTTACGATATGGCATCACTTATGAGCCATTGTTTGATTATACAGAAAATAATCCTGGAGTCGGTTGGATGCTTCCGG TATATCAGGCTTCCGATTGGAAGAAAGGAGAATGTGGATTCTCATCTAAAGAGATAAAAGGATCTACCACTCGTCATTTA GGTACTTGGTGGACATCTCCTTCATTGTGGTTACGTAAATCTTTTTTTGTTGGCAAACAGGTGGGAAATTTAGCACTCAG GGTTGCTCATGACGGAGATACAAAAATATATTTGAATGGAACATTGATTTACGAAAAACAGGGACGGGATTATTGTATGG TAAACCTTGATGAAAAGCAACGAGAGCTTCTGAAAAAAGGAGAGAACTTGCTTGCTGTAGAAACAAATAAAGGGCGTGCC CAATTTTTTGATGTTTCTTTGTTTGATATGAGGAGTGAAACAGCAGATGATATTTTGATGACCCCGGGACAACCTAATAT TTTAAGGGGGCCCAATGGATTTGAATGGTGGCTTATATATATGGCTAATAAAAATAATGAGTGTAGGGGGCAGTATATTA ACCGTGTTCATTTCTTTAATAAAACATTATTTGTTGAAGGAATAACCGGTCCTTGTACAGATGGCTATCATCCGGAACCT TCTTTGCCCACTTTTTCAATGAAAGGGGAAACACCTTCTTTTGGAGTGCTGCAACAAGTGAAACCTTCTACAACTTATAT GTTTGAAACAGCAGTCAAAACAGATGGAGATGCTGGTATCATTGCGTGGTGGAAAGATGTGGATAATAATGCTTATATCG GTTTCGATACAAAGAACCACAATTGGTATTTGCGTACCATTATTAATGGTAAAGAAAAGGAGGAATATTTCACTTTGCCT AAAGATTTTCGTTGGGGTGTTTATCATCATTTACGTATTGAACGTAATCAGGATTGTTTAAAAGTATGGTTGGATGAAAT ACCATCTCCTCAAAAACATCTGTTTACAAAGATTATTCCTGTGACGGAACCCGGTGTTCCCGGAGTGTTTGATCGGACTA AAAAAGCTTTGTTCGAAGGGGTGACTTATACTATCGGATTTGATGATGACCGGATACAGTTAAAAGAACATTCAGAAATA TTGAAAGGTGATTTTCTTGATCATTATGAATTTAGTTTTCAACTTTCAGGTTTGTCCGATTGTAAGATGTCAGGAAGCTA TCCGGTTTATGTGGATAAAGATAACTATGTAAAAGCTCAATTTAATGGTATCACGCGTATGCTGGAAGTGGTAGTTGTAA AACAAGGACAACAGATACTTGATAAAAAATATCCGTTGGAACATTTACAAATGGTTTATCCTGATGTGAAGTATACTGAT TTTGTCGAAAAATGTTATCGTTTTATATCGCCTTCATGGATAAATGCCCTTTACCTGAACCGTCATGAAGTAGGGAATAA GGCGGAGTTTGTAGACGATATGTTTAGTAAATTTACAATAGAATATTTGAATGAGGGAAAATGGTATCCATTGAATAACA GCGGGGCGACGGTGGCAGAGCATCTGGCTTATAATCGTTTGTCTTTTACTCCGATAAAAACGGAAGGTATTCGTTTTATT AATAAAGACGCTCAGGATTTGGAACGGCATATTTATAAGTTGGGAATTCAAGAACAATTAAAGGAATCTTATAATTTCCG TGCGGTGAGAAGGGGAAATAAGCTCTATCTTTTTGTTGACGGAAGAGAATTAGGGAGATTGGATATTCATTATCCTGCTT CTTGTGTAGGATTTTGTTCTGGAAATTATTCTCCGGTATATAAAGGAATATTGTATTATCATATAGGAAACTGA
Upstream 100 bases:
>100_bases ACTCAGAATCCTAATTATTAATAAAAAAGAAAGACTGTGTCGGAGTGTTTTTTCTTTTTATAATACTTCCGGCATAGTCT TTATTTAACTAGTATCATTT
Downstream 100 bases:
>100_bases CTAGTATTATGAAAAAAAAAATGATTTTTATTTGGTTATTGATGTTGGGGACATTGACTTCTTGTCAGTCATGTTCCTCA GAATATAAGAATGTGAATGA
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Endo-1 4-Beta-Xylanase D; Endo-1 4-Beta-Xylanase; Beta-Xylosidase; Family; Secreted Glycosyl Hydrolase; Xylosidase/Arabinofuranosidase; Glycoside Hydrolase Family Protein; Exported Glycosylhydrolase
Number of amino acids: Translated: 877; Mature: 877
Protein sequence:
>877_residues MLVCKKILIFCAFACCGTLFAQNIQNPVLPGVADAGVMKYNGKYYIGGVFTNGDFYVSDDLVHWGKPVHVVTMDNGWSKG SGAGNEQIHANDMFCLNGDFHLYWSVNYWGKDKHAVHIVHAQSKNVLGPYIEPDKKTWMDNRIDPKVFKDDDGQLYMYMV RFTDGNTIWGRKMKNPAEFAGEPVCLFASLPDTWETMDNRVAEGPWVMKYRDRYYLMYNANHTSTEWGNYQLGVAEADSP LSFQNGNKYSYPVVNSNQILLEENYVDLLRYGITYEPLFDYTENNPGVGWMLPVYQASDWKKGECGFSSKEIKGSTTRHL GTWWTSPSLWLRKSFFVGKQVGNLALRVAHDGDTKIYLNGTLIYEKQGRDYCMVNLDEKQRELLKKGENLLAVETNKGRA QFFDVSLFDMRSETADDILMTPGQPNILRGPNGFEWWLIYMANKNNECRGQYINRVHFFNKTLFVEGITGPCTDGYHPEP SLPTFSMKGETPSFGVLQQVKPSTTYMFETAVKTDGDAGIIAWWKDVDNNAYIGFDTKNHNWYLRTIINGKEKEEYFTLP KDFRWGVYHHLRIERNQDCLKVWLDEIPSPQKHLFTKIIPVTEPGVPGVFDRTKKALFEGVTYTIGFDDDRIQLKEHSEI LKGDFLDHYEFSFQLSGLSDCKMSGSYPVYVDKDNYVKAQFNGITRMLEVVVVKQGQQILDKKYPLEHLQMVYPDVKYTD FVEKCYRFISPSWINALYLNRHEVGNKAEFVDDMFSKFTIEYLNEGKWYPLNNSGATVAEHLAYNRLSFTPIKTEGIRFI NKDAQDLERHIYKLGIQEQLKESYNFRAVRRGNKLYLFVDGRELGRLDIHYPASCVGFCSGNYSPVYKGILYYHIGN
Sequences:
>Translated_877_residues MLVCKKILIFCAFACCGTLFAQNIQNPVLPGVADAGVMKYNGKYYIGGVFTNGDFYVSDDLVHWGKPVHVVTMDNGWSKG SGAGNEQIHANDMFCLNGDFHLYWSVNYWGKDKHAVHIVHAQSKNVLGPYIEPDKKTWMDNRIDPKVFKDDDGQLYMYMV RFTDGNTIWGRKMKNPAEFAGEPVCLFASLPDTWETMDNRVAEGPWVMKYRDRYYLMYNANHTSTEWGNYQLGVAEADSP LSFQNGNKYSYPVVNSNQILLEENYVDLLRYGITYEPLFDYTENNPGVGWMLPVYQASDWKKGECGFSSKEIKGSTTRHL GTWWTSPSLWLRKSFFVGKQVGNLALRVAHDGDTKIYLNGTLIYEKQGRDYCMVNLDEKQRELLKKGENLLAVETNKGRA QFFDVSLFDMRSETADDILMTPGQPNILRGPNGFEWWLIYMANKNNECRGQYINRVHFFNKTLFVEGITGPCTDGYHPEP SLPTFSMKGETPSFGVLQQVKPSTTYMFETAVKTDGDAGIIAWWKDVDNNAYIGFDTKNHNWYLRTIINGKEKEEYFTLP KDFRWGVYHHLRIERNQDCLKVWLDEIPSPQKHLFTKIIPVTEPGVPGVFDRTKKALFEGVTYTIGFDDDRIQLKEHSEI LKGDFLDHYEFSFQLSGLSDCKMSGSYPVYVDKDNYVKAQFNGITRMLEVVVVKQGQQILDKKYPLEHLQMVYPDVKYTD FVEKCYRFISPSWINALYLNRHEVGNKAEFVDDMFSKFTIEYLNEGKWYPLNNSGATVAEHLAYNRLSFTPIKTEGIRFI NKDAQDLERHIYKLGIQEQLKESYNFRAVRRGNKLYLFVDGRELGRLDIHYPASCVGFCSGNYSPVYKGILYYHIGN >Mature_877_residues MLVCKKILIFCAFACCGTLFAQNIQNPVLPGVADAGVMKYNGKYYIGGVFTNGDFYVSDDLVHWGKPVHVVTMDNGWSKG SGAGNEQIHANDMFCLNGDFHLYWSVNYWGKDKHAVHIVHAQSKNVLGPYIEPDKKTWMDNRIDPKVFKDDDGQLYMYMV RFTDGNTIWGRKMKNPAEFAGEPVCLFASLPDTWETMDNRVAEGPWVMKYRDRYYLMYNANHTSTEWGNYQLGVAEADSP LSFQNGNKYSYPVVNSNQILLEENYVDLLRYGITYEPLFDYTENNPGVGWMLPVYQASDWKKGECGFSSKEIKGSTTRHL GTWWTSPSLWLRKSFFVGKQVGNLALRVAHDGDTKIYLNGTLIYEKQGRDYCMVNLDEKQRELLKKGENLLAVETNKGRA QFFDVSLFDMRSETADDILMTPGQPNILRGPNGFEWWLIYMANKNNECRGQYINRVHFFNKTLFVEGITGPCTDGYHPEP SLPTFSMKGETPSFGVLQQVKPSTTYMFETAVKTDGDAGIIAWWKDVDNNAYIGFDTKNHNWYLRTIINGKEKEEYFTLP KDFRWGVYHHLRIERNQDCLKVWLDEIPSPQKHLFTKIIPVTEPGVPGVFDRTKKALFEGVTYTIGFDDDRIQLKEHSEI LKGDFLDHYEFSFQLSGLSDCKMSGSYPVYVDKDNYVKAQFNGITRMLEVVVVKQGQQILDKKYPLEHLQMVYPDVKYTD FVEKCYRFISPSWINALYLNRHEVGNKAEFVDDMFSKFTIEYLNEGKWYPLNNSGATVAEHLAYNRLSFTPIKTEGIRFI NKDAQDLERHIYKLGIQEQLKESYNFRAVRRGNKLYLFVDGRELGRLDIHYPASCVGFCSGNYSPVYKGILYYHIGN
Specific function: Unknown
COG id: COG3507
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101162; Mature: 101162
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVCKKILIFCAFACCGTLFAQNIQNPVLPGVADAGVMKYNGKYYIGGVFTNGDFYVSDD CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEEEECCCEEEECC LVHWGKPVHVVTMDNGWSKGSGAGNEQIHANDMFCLNGDFHLYWSVNYWGKDKHAVHIVH HHHCCCCEEEEEECCCCCCCCCCCCCEEECCCEEEECCCEEEEEEEEEECCCCCEEEEEE AQSKNVLGPYIEPDKKTWMDNRIDPKVFKDDDGQLYMYMVRFTDGNTIWGRKMKNPAEFA ECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCEEEEEEEEECCCEEECCCCCCHHHHC GEPVCLFASLPDTWETMDNRVAEGPWVMKYRDRYYLMYNANHTSTEWGNYQLGVAEADSP CCCEEEEECCCCHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEECCCCC LSFQNGNKYSYPVVNSNQILLEENYVDLLRYGITYEPLFDYTENNPGVGWMLPVYQASDW CEECCCCEEECEEECCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC KKGECGFSSKEIKGSTTRHLGTWWTSPSLWLRKSFFVGKQVGNLALRVAHDGDTKIYLNG CCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEE TLIYEKQGRDYCMVNLDEKQRELLKKGENLLAVETNKGRAQFFDVSLFDMRSETADDILM EEEEEECCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEE TPGQPNILRGPNGFEWWLIYMANKNNECRGQYINRVHFFNKTLFVEGITGPCTDGYHPEP CCCCCCEEECCCCCEEEEEEEECCCCCCCHHHHHEEEEECCEEEEECCCCCCCCCCCCCC SLPTFSMKGETPSFGVLQQVKPSTTYMFETAVKTDGDAGIIAWWKDVDNNAYIGFDTKNH CCCEEEECCCCCCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCC NWYLRTIINGKEKEEYFTLPKDFRWGVYHHLRIERNQDCLKVWLDEIPSPQKHLFTKIIP CEEEEEEECCCCCCCEECCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHEEEEE VTEPGVPGVFDRTKKALFEGVTYTIGFDDDRIQLKEHSEILKGDFLDHYEFSFQLSGLSD CCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHCCCCCCEEEEEEECCCCC CKMSGSYPVYVDKDNYVKAQFNGITRMLEVVVVKQGQQILDKKYPLEHLQMVYPDVKYTD CCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHCCCCCHHH FVEKCYRFISPSWINALYLNRHEVGNKAEFVDDMFSKFTIEYLNEGKWYPLNNSGATVAE HHHHHHHHCCCCHHEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH HLAYNRLSFTPIKTEGIRFINKDAQDLERHIYKLGIQEQLKESYNFRAVRRGNKLYLFVD HHHHCCEEECEECCCCCEEECCCHHHHHHHHHHHCHHHHHHHCCCEEEEECCCEEEEEEC GRELGRLDIHYPASCVGFCSGNYSPVYKGILYYHIGN CCCCCEEEECCCCCEEEEECCCCCCCEEEEEEEEECC >Mature Secondary Structure MLVCKKILIFCAFACCGTLFAQNIQNPVLPGVADAGVMKYNGKYYIGGVFTNGDFYVSDD CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEEEECCCEEEECC LVHWGKPVHVVTMDNGWSKGSGAGNEQIHANDMFCLNGDFHLYWSVNYWGKDKHAVHIVH HHHCCCCEEEEEECCCCCCCCCCCCCEEECCCEEEECCCEEEEEEEEEECCCCCEEEEEE AQSKNVLGPYIEPDKKTWMDNRIDPKVFKDDDGQLYMYMVRFTDGNTIWGRKMKNPAEFA ECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCEEEEEEEEECCCEEECCCCCCHHHHC GEPVCLFASLPDTWETMDNRVAEGPWVMKYRDRYYLMYNANHTSTEWGNYQLGVAEADSP CCCEEEEECCCCHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEECCCCC LSFQNGNKYSYPVVNSNQILLEENYVDLLRYGITYEPLFDYTENNPGVGWMLPVYQASDW CEECCCCEEECEEECCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC KKGECGFSSKEIKGSTTRHLGTWWTSPSLWLRKSFFVGKQVGNLALRVAHDGDTKIYLNG CCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEE TLIYEKQGRDYCMVNLDEKQRELLKKGENLLAVETNKGRAQFFDVSLFDMRSETADDILM EEEEEECCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEE TPGQPNILRGPNGFEWWLIYMANKNNECRGQYINRVHFFNKTLFVEGITGPCTDGYHPEP CCCCCCEEECCCCCEEEEEEEECCCCCCCHHHHHEEEEECCEEEEECCCCCCCCCCCCCC SLPTFSMKGETPSFGVLQQVKPSTTYMFETAVKTDGDAGIIAWWKDVDNNAYIGFDTKNH CCCEEEECCCCCCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCC NWYLRTIINGKEKEEYFTLPKDFRWGVYHHLRIERNQDCLKVWLDEIPSPQKHLFTKIIP CEEEEEEECCCCCCCEECCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHEEEEE VTEPGVPGVFDRTKKALFEGVTYTIGFDDDRIQLKEHSEILKGDFLDHYEFSFQLSGLSD CCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHCCCCCCEEEEEEECCCCC CKMSGSYPVYVDKDNYVKAQFNGITRMLEVVVVKQGQQILDKKYPLEHLQMVYPDVKYTD CCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHCCCCCHHH FVEKCYRFISPSWINALYLNRHEVGNKAEFVDDMFSKFTIEYLNEGKWYPLNNSGATVAE HHHHHHHHCCCCHHEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH HLAYNRLSFTPIKTEGIRFINKDAQDLERHIYKLGIQEQLKESYNFRAVRRGNKLYLFVD HHHHCCEEECEECCCCCEEECCCHHHHHHHHHHHCHHHHHHHCCCEEEEECCCEEEEEEC GRELGRLDIHYPASCVGFCSGNYSPVYKGILYYHIGN CCCCCEEEECCCCCEEEEECCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA