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The map label for this gene is 150004750

Identifier: 150004750

GI number: 150004750

Start: 2856211

End: 2856771

Strand: Direct

Name: 150004750

Synonym: BVU_2211

Alternate gene names: NA

Gene position: 2856211-2856771 (Clockwise)

Preceding gene: 150004749

Following gene: 150004752

Centisome position: 55.32

GC content: 42.6

Gene sequence:

>561_bases
ATGAAAGAGACGAAGAATGTTTTTATGTCAGAACTGACGGAGGTGTTTAGCAAACGTCAGCAACAGTTTGTTCAGTTTGC
TTACTCGTATGTCAGGAACAGGGAAGAGGCTGAGGATATTGTAATGGGGGCTTTTACTAATGTATGGGAGCACCGGAATG
AGTTACAGGAGGATACCAATATTTCTGCGTTGCTGTTGACTGCCATAAAAAATCGTTCATTGAATCATTTGCAACACTTG
GAGGTACGTATGCGTGCCGAGCAGCATATAGGAGATATGCGGCAGAAAGAACTGGCTTTGCGTATCTCGACTTTGGAGGC
TTGTGATCCCGATAAATTGTTTTGTGATGAGATTCAAGCTTTGGTGCAGGAAGCCATTAGTGAATTGCCTCCTACAAGCA
GGGAGGTGTTTATTTTGAGCCGGATGAAAAATTTACCGAACAAGGAAATTGCTTTGCGGCTGGATATTTCTGTAAAGACT
GTAGAATTTCATATCACCCGGTCGCTGAAACAGTTGCGGGTGCAGCTGAAGGATTATCAGTTTCTTTGGAGTTTTTTATA
A

Upstream 100 bases:

>100_bases
TGCTTTGTTGTATGTATTATTTTGTTGGAGTATTGTTCATATTTTATACAAGAAAGGTATTTATGTCAAGATCTAAAAAC
GGAAACAGAAAATTAGTTAA

Downstream 100 bases:

>100_bases
AACAAGACCATGTCTCAGTTATTTGGACATGGTCTTGTTCTTATTTCATATACAGGAATCAGAAACTATAATCTGCACTT
AAACCGAACACTTTGTTGGT

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma-H Factor; Sigma-; ECF-Type RNA Polymerase; RNA Polymerase Sigma-W Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKETKNVFMSELTEVFSKRQQQFVQFAYSYVRNREEAEDIVMGAFTNVWEHRNELQEDTNISALLLTAIKNRSLNHLQHL
EVRMRAEQHIGDMRQKELALRISTLEACDPDKLFCDEIQALVQEAISELPPTSREVFILSRMKNLPNKEIALRLDISVKT
VEFHITRSLKQLRVQLKDYQFLWSFL

Sequences:

>Translated_186_residues
MKETKNVFMSELTEVFSKRQQQFVQFAYSYVRNREEAEDIVMGAFTNVWEHRNELQEDTNISALLLTAIKNRSLNHLQHL
EVRMRAEQHIGDMRQKELALRISTLEACDPDKLFCDEIQALVQEAISELPPTSREVFILSRMKNLPNKEIALRLDISVKT
VEFHITRSLKQLRVQLKDYQFLWSFL
>Mature_186_residues
MKETKNVFMSELTEVFSKRQQQFVQFAYSYVRNREEAEDIVMGAFTNVWEHRNELQEDTNISALLLTAIKNRSLNHLQHL
EVRMRAEQHIGDMRQKELALRISTLEACDPDKLFCDEIQALVQEAISELPPTSREVFILSRMKNLPNKEIALRLDISVKT
VEFHITRSLKQLRVQLKDYQFLWSFL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21971; Mature: 21971

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETKNVFMSELTEVFSKRQQQFVQFAYSYVRNREEAEDIVMGAFTNVWEHRNELQEDTN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ISALLLTAIKNRSLNHLQHLEVRMRAEQHIGDMRQKELALRISTLEACDPDKLFCDEIQA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LVQEAISELPPTSREVFILSRMKNLPNKEIALRLDISVKTVEFHITRSLKQLRVQLKDYQ
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECEEEHHHHHHHHHHHHHHHHHHHHH
FLWSFL
HHHHCC
>Mature Secondary Structure
MKETKNVFMSELTEVFSKRQQQFVQFAYSYVRNREEAEDIVMGAFTNVWEHRNELQEDTN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ISALLLTAIKNRSLNHLQHLEVRMRAEQHIGDMRQKELALRISTLEACDPDKLFCDEIQA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LVQEAISELPPTSREVFILSRMKNLPNKEIALRLDISVKTVEFHITRSLKQLRVQLKDYQ
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECEEEHHHHHHHHHHHHHHHHHHHHH
FLWSFL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA