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The map label for this gene is ydcP [H]

Identifier: 150004586

GI number: 150004586

Start: 2645337

End: 2647166

Strand: Direct

Name: ydcP [H]

Synonym: BVU_2043

Alternate gene names: 150004586

Gene position: 2645337-2647166 (Clockwise)

Preceding gene: 150004585

Following gene: 150004587

Centisome position: 51.23

GC content: 42.73

Gene sequence:

>1830_bases
ATGATCAGACAACGAAAAATAGAATTATTAGCTCCTGCTAAAAATCTGGAGTGCGGTATTGCAGCTGTTGATCACGGTGC
TGATGCCATTTATATTGGTGCTCCCCGTTTCGGAGCACGTGCGGCTGCGGGGAATTCATTGGAGGATATCGCTGAGTTGG
TGCGGTACGCTCATGTGTATAATGTCCGTATCTATGTGACGGTGAATACGATTCTGAAGGATGAGGAACTGAAGGATACG
GAAAAAATGATTTGGGATTTATACCGTGCCGGAGTGGATGCTTTGATCGTGCAGGATATGGGATTGTTGGAATTGAATCT
GCCCCCTATACCGTTACATGCCAGCACACAGATGGATAATCGTACTCCTCAAAAAGTAAGATTCCTGGCTGAGGCAGGTT
TCCGTCAGGTGGTATTGGCTCGTGAACTTTCTCTTGTTGAAATAGGAAATATCCATCATGCTTGTCCTGATGTGCCTTTG
GAGGTATTTGTACATGGTGCTTTGTGTGTAAGCTATAGTGGACAATGTTATGTTAGTCAGGCTTGTTTCGGACGTAGTGC
CAATCGGGGAGAATGTGCCCAGTTCTGTCGCCTTGCTTTTGATATGGTAGATGCGGACGGTAAATCTATAGTAAGGAATA
AGCATTTATTGTCTCTGAAAGATTTGAATCAGAGCGAAGAGTTGGAGCAATTGCTGGATGCCGGAGCTTCTTCCCTGAAA
ATAGAGGGACGTTTGAAGGATGTATCTTACGTTAAAAATGTAACAGCTTATTATCGCCAGAAGCTGGATAGTGTTTTCAA
ACGTCGTAAAGAGTATATCCGTGCTTCATCGGGGAAAGTGAAATTAGAGTTCAAACCTCAATTGGATAAGAGTTTCAGTC
GTGGTTTTACTAATTATTTTCTTTTTGACAGGAATAAGGATATTTTTTCTTTTGATACTCCCAAGTCTTTAGGGGAGGAG
ATGGGGACAGTGAAGGAAATTCGTGGTAATTATCTTACCGTAGCCGGAATCAAGTCTTTTAATAATGGAGATGGCGTCTG
TTTTTTGGATGAGACTGGTAAGTTGCAGGGATTTCGCATAAACCGGGTGGAGAATAATAAGTTATTTCCTCAAGAGATGC
CTCGGATAAAGCCCCGTACGATACTTTATCGTAATTTTGATCAGGAATTTGAGAGGTTGATGTCGCGTAAATCAGCTGAA
AGGAAAATTGCTGTCATTTTAAAATTGGCTGAAAATAATCGGGGCTTTACTCTGTCTCTGACCGATGAAGATGATCACAG
TGCCAGTGTGGTGCTGGAAAGGGAGAAGGAACGTGCCCGTACTCCGCAGGAAGATAACTTGCGTACACAACTTGGAAAGT
TAGGAAATACTCCATTTGAAGCGTCAGATATAGTGATTGACTGGTCGGACAATTGGTTTATTCCAGCTTCTATGCTTGCC
GAACTTCGCCGTAAGGGAATAGAGAAACTGCTGGAAGTGCGCCGTATTAACTATCGGCAGGAAATTTACAAGTTGCCTCG
AACGCATCATGCTTTTCCTGTGAATGAATTGACTTATTTGGGAAATGTGATGAATGCTGATGCTGTTTCCTTCTATAGGA
ATCATGGCGTGCAGCGTATTGCTCCGGCTTATGAAAAGGCTCCGGCAGAAGAAGCGGTATTGATGTTTTGCAAGCATTGT
TTGCGTTATAGTATGGGATGGTGTCCCTCTTGGCATAAAGTGCGTTCTCCTTATAGGGAACCTTATTATTTGGTTAGCTC
GGATAACAGACGTTTCCGCTTAGAGTTTGATTGTAAGAATTGTCAGATGAAAGTCTATGCTGAAAAGTAA

Upstream 100 bases:

>100_bases
CCCCGGTGGTGCGTTGGCGCGGACATGCCAATTTGTTGTTTTCTAATTGGTTGAACTATTATGTATATCAGGAAACCCCG
TTTGATATAAATCAGATACG

Downstream 100 bases:

>100_bases
GTACATCGGATTACTGTTTTTGGTGTTGGCTATTTTAATGGCTTGCCAATATCCTTCACCTGTTACTCCGAGTGGGGATA
TGCCGCAAAAGAAAAGGGAT

Product: putative collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MIRQRKIELLAPAKNLECGIAAVDHGADAIYIGAPRFGARAAAGNSLEDIAELVRYAHVYNVRIYVTVNTILKDEELKDT
EKMIWDLYRAGVDALIVQDMGLLELNLPPIPLHASTQMDNRTPQKVRFLAEAGFRQVVLARELSLVEIGNIHHACPDVPL
EVFVHGALCVSYSGQCYVSQACFGRSANRGECAQFCRLAFDMVDADGKSIVRNKHLLSLKDLNQSEELEQLLDAGASSLK
IEGRLKDVSYVKNVTAYYRQKLDSVFKRRKEYIRASSGKVKLEFKPQLDKSFSRGFTNYFLFDRNKDIFSFDTPKSLGEE
MGTVKEIRGNYLTVAGIKSFNNGDGVCFLDETGKLQGFRINRVENNKLFPQEMPRIKPRTILYRNFDQEFERLMSRKSAE
RKIAVILKLAENNRGFTLSLTDEDDHSASVVLEREKERARTPQEDNLRTQLGKLGNTPFEASDIVIDWSDNWFIPASMLA
ELRRKGIEKLLEVRRINYRQEIYKLPRTHHAFPVNELTYLGNVMNADAVSFYRNHGVQRIAPAYEKAPAEEAVLMFCKHC
LRYSMGWCPSWHKVRSPYREPYYLVSSDNRRFRLEFDCKNCQMKVYAEK

Sequences:

>Translated_609_residues
MIRQRKIELLAPAKNLECGIAAVDHGADAIYIGAPRFGARAAAGNSLEDIAELVRYAHVYNVRIYVTVNTILKDEELKDT
EKMIWDLYRAGVDALIVQDMGLLELNLPPIPLHASTQMDNRTPQKVRFLAEAGFRQVVLARELSLVEIGNIHHACPDVPL
EVFVHGALCVSYSGQCYVSQACFGRSANRGECAQFCRLAFDMVDADGKSIVRNKHLLSLKDLNQSEELEQLLDAGASSLK
IEGRLKDVSYVKNVTAYYRQKLDSVFKRRKEYIRASSGKVKLEFKPQLDKSFSRGFTNYFLFDRNKDIFSFDTPKSLGEE
MGTVKEIRGNYLTVAGIKSFNNGDGVCFLDETGKLQGFRINRVENNKLFPQEMPRIKPRTILYRNFDQEFERLMSRKSAE
RKIAVILKLAENNRGFTLSLTDEDDHSASVVLEREKERARTPQEDNLRTQLGKLGNTPFEASDIVIDWSDNWFIPASMLA
ELRRKGIEKLLEVRRINYRQEIYKLPRTHHAFPVNELTYLGNVMNADAVSFYRNHGVQRIAPAYEKAPAEEAVLMFCKHC
LRYSMGWCPSWHKVRSPYREPYYLVSSDNRRFRLEFDCKNCQMKVYAEK
>Mature_609_residues
MIRQRKIELLAPAKNLECGIAAVDHGADAIYIGAPRFGARAAAGNSLEDIAELVRYAHVYNVRIYVTVNTILKDEELKDT
EKMIWDLYRAGVDALIVQDMGLLELNLPPIPLHASTQMDNRTPQKVRFLAEAGFRQVVLARELSLVEIGNIHHACPDVPL
EVFVHGALCVSYSGQCYVSQACFGRSANRGECAQFCRLAFDMVDADGKSIVRNKHLLSLKDLNQSEELEQLLDAGASSLK
IEGRLKDVSYVKNVTAYYRQKLDSVFKRRKEYIRASSGKVKLEFKPQLDKSFSRGFTNYFLFDRNKDIFSFDTPKSLGEE
MGTVKEIRGNYLTVAGIKSFNNGDGVCFLDETGKLQGFRINRVENNKLFPQEMPRIKPRTILYRNFDQEFERLMSRKSAE
RKIAVILKLAENNRGFTLSLTDEDDHSASVVLEREKERARTPQEDNLRTQLGKLGNTPFEASDIVIDWSDNWFIPASMLA
ELRRKGIEKLLEVRRINYRQEIYKLPRTHHAFPVNELTYLGNVMNADAVSFYRNHGVQRIAPAYEKAPAEEAVLMFCKHC
LRYSMGWCPSWHKVRSPYREPYYLVSSDNRRFRLEFDCKNCQMKVYAEK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=619, Percent_Identity=44.1033925686591, Blast_Score=510, Evalue=1e-145,
Organism=Escherichia coli, GI1788397, Length=421, Percent_Identity=28.7410926365796, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1789548, Length=294, Percent_Identity=30.6122448979592, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 69825; Mature: 69825

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRQRKIELLAPAKNLECGIAAVDHGADAIYIGAPRFGARAAAGNSLEDIAELVRYAHVY
CCCCCCEEEECCCCCCCCCEEEECCCCCEEEECCCCCCCHHCCCCCHHHHHHHHHHHHEE
NVRIYVTVNTILKDEELKDTEKMIWDLYRAGVDALIVQDMGLLELNLPPIPLHASTQMDN
EEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCCC
RTPQKVRFLAEAGFRQVVLARELSLVEIGNIHHACPDVPLEVFVHGALCVSYSGQCYVSQ
CCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHEEEEEEEEECCCEEEEH
ACFGRSANRGECAQFCRLAFDMVDADGKSIVRNKHLLSLKDLNQSEELEQLLDAGASSLK
HHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCEEEHHCCCCHHHHHHHHHCCCCEEE
IEGRLKDVSYVKNVTAYYRQKLDSVFKRRKEYIRASSGKVKLEFKPQLDKSFSRGFTNYF
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCEEE
LFDRNKDIFSFDTPKSLGEEMGTVKEIRGNYLTVAGIKSFNNGDGVCFLDETGKLQGFRI
EEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEE
NRVENNKLFPQEMPRIKPRTILYRNFDQEFERLMSRKSAERKIAVILKLAENNRGFTLSL
EEECCCCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEE
TDEDDHSASVVLEREKERARTPQEDNLRTQLGKLGNTPFEASDIVIDWSDNWFIPASMLA
CCCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCEEECHHHHH
ELRRKGIEKLLEVRRINYRQEIYKLPRTHHAFPVNELTYLGNVMNADAVSFYRNHGVQRI
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCHHHH
APAYEKAPAEEAVLMFCKHCLRYSMGWCPSWHKVRSPYREPYYLVSSDNRRFRLEFDCKN
CCHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCC
CQMKVYAEK
CEEEEEECC
>Mature Secondary Structure
MIRQRKIELLAPAKNLECGIAAVDHGADAIYIGAPRFGARAAAGNSLEDIAELVRYAHVY
CCCCCCEEEECCCCCCCCCEEEECCCCCEEEECCCCCCCHHCCCCCHHHHHHHHHHHHEE
NVRIYVTVNTILKDEELKDTEKMIWDLYRAGVDALIVQDMGLLELNLPPIPLHASTQMDN
EEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCCC
RTPQKVRFLAEAGFRQVVLARELSLVEIGNIHHACPDVPLEVFVHGALCVSYSGQCYVSQ
CCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHEEEEEEEEECCCEEEEH
ACFGRSANRGECAQFCRLAFDMVDADGKSIVRNKHLLSLKDLNQSEELEQLLDAGASSLK
HHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCEEEHHCCCCHHHHHHHHHCCCCEEE
IEGRLKDVSYVKNVTAYYRQKLDSVFKRRKEYIRASSGKVKLEFKPQLDKSFSRGFTNYF
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCEEE
LFDRNKDIFSFDTPKSLGEEMGTVKEIRGNYLTVAGIKSFNNGDGVCFLDETGKLQGFRI
EEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEE
NRVENNKLFPQEMPRIKPRTILYRNFDQEFERLMSRKSAERKIAVILKLAENNRGFTLSL
EEECCCCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEE
TDEDDHSASVVLEREKERARTPQEDNLRTQLGKLGNTPFEASDIVIDWSDNWFIPASMLA
CCCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCEEECHHHHH
ELRRKGIEKLLEVRRINYRQEIYKLPRTHHAFPVNELTYLGNVMNADAVSFYRNHGVQRI
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCHHHH
APAYEKAPAEEAVLMFCKHCLRYSMGWCPSWHKVRSPYREPYYLVSSDNRRFRLEFDCKN
CCHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCC
CQMKVYAEK
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]