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The map label for this gene is 150004358

Identifier: 150004358

GI number: 150004358

Start: 2331049

End: 2331612

Strand: Direct

Name: 150004358

Synonym: BVU_1804

Alternate gene names: NA

Gene position: 2331049-2331612 (Clockwise)

Preceding gene: 150004357

Following gene: 150004359

Centisome position: 45.15

GC content: 30.14

Gene sequence:

>564_bases
ATGGATGATCTATTAAAGTTGGAAACAGAAACTTTTAATAAATTATATACTGATTACAGGTTACGGTTTATTCGTTTTGC
GCAAACTTATATTCTCGATATTTCTATAGCTGAAGATATTGTGATGGACACTTTAGCTTATTATTGGGAACATCGAAGAG
ATATAAAGAACGATGAGAATATATTAAGTTATCTTTTAACGGCTATAAAGCATAAATGCTTGAACTATTTAAGACAGGAA
CGCTTTCATTATGAAAAGAATAATTCTTTGTCTGAACTTGCTTTATGGGAATTGGATTTTAAGATATCAGCATTATCGGC
ATGTGATCCTTGTGAATTGTATACTAATGAGGTGCAAGAGATTGTAAATCATACGCTTGAAAAATTGCCATCAAAAACTC
GACAGATTTTTTTTATGAACAGATATGAAGATATATCCTACCCTGAAATAGCTAAAAAGTTATTTGTGAATCAAAAAACC
GTTGAATATCATATAAGTAAGGCATTAAAAGCTCTACGTGCTGTCCTCAAAGACTATCTTTCTTTTTTGATTTATCTAAT
TTAG

Upstream 100 bases:

>100_bases
TGGGTGCCGGATAGTTGTATAAATGGGACGAAGTAATAATTAGTGGAGATAAGTTTGCGCATCGAATATTGAGGTATCTA
ATTAAATATCGGAAACAGAT

Downstream 100 bases:

>100_bases
CAGATTTTTTTGTTTTTCGTTTAGGGTATTTCCATTCTCATGTGCTTATAGAGTAAATAATGGAAAGAAAATGAATTTAT
TATCGTTGTATCATTTTTTT

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase; Sigma Factor; ECF-Type Sigma Factor

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDDLLKLETETFNKLYTDYRLRFIRFAQTYILDISIAEDIVMDTLAYYWEHRRDIKNDENILSYLLTAIKHKCLNYLRQE
RFHYEKNNSLSELALWELDFKISALSACDPCELYTNEVQEIVNHTLEKLPSKTRQIFFMNRYEDISYPEIAKKLFVNQKT
VEYHISKALKALRAVLKDYLSFLIYLI

Sequences:

>Translated_187_residues
MDDLLKLETETFNKLYTDYRLRFIRFAQTYILDISIAEDIVMDTLAYYWEHRRDIKNDENILSYLLTAIKHKCLNYLRQE
RFHYEKNNSLSELALWELDFKISALSACDPCELYTNEVQEIVNHTLEKLPSKTRQIFFMNRYEDISYPEIAKKLFVNQKT
VEYHISKALKALRAVLKDYLSFLIYLI
>Mature_187_residues
MDDLLKLETETFNKLYTDYRLRFIRFAQTYILDISIAEDIVMDTLAYYWEHRRDIKNDENILSYLLTAIKHKCLNYLRQE
RFHYEKNNSLSELALWELDFKISALSACDPCELYTNEVQEIVNHTLEKLPSKTRQIFFMNRYEDISYPEIAKKLFVNQKT
VEYHISKALKALRAVLKDYLSFLIYLI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22517; Mature: 22517

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLLKLETETFNKLYTDYRLRFIRFAQTYILDISIAEDIVMDTLAYYWEHRRDIKNDEN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILSYLLTAIKHKCLNYLRQERFHYEKNNSLSELALWELDFKISALSACDPCELYTNEVQE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
IVNHTLEKLPSKTRQIFFMNRYEDISYPEIAKKLFVNQKTVEYHISKALKALRAVLKDYL
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SFLIYLI
HHHHHHC
>Mature Secondary Structure
MDDLLKLETETFNKLYTDYRLRFIRFAQTYILDISIAEDIVMDTLAYYWEHRRDIKNDEN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILSYLLTAIKHKCLNYLRQERFHYEKNNSLSELALWELDFKISALSACDPCELYTNEVQE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
IVNHTLEKLPSKTRQIFFMNRYEDISYPEIAKKLFVNQKTVEYHISKALKALRAVLKDYL
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SFLIYLI
HHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA