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The map label for this gene is rimM

Identifier: 150004208

GI number: 150004208

Start: 2131449

End: 2131967

Strand: Direct

Name: rimM

Synonym: BVU_1649

Alternate gene names: 150004208

Gene position: 2131449-2131967 (Clockwise)

Preceding gene: 150004207

Following gene: 150004209

Centisome position: 41.28

GC content: 41.23

Gene sequence:

>519_bases
ATGATTAAGAAAGATGAAGTTTTCAAGATTGGTATATTCAACAAACCGCATGGAGTAAAAGGAGAAATCTCATTCACTTT
TACGGATGATATTTTTGACCGTGTGGAATGTGAGTATCTGGTCTGTTTGTTAGACGGTATATTCGTGCCTTTCTTTATTG
AAGAGTATCGTTTTCGTTCAGATACCACTGCTTTAGTCAAACTGGAAGGGGTGGATACCTCGGAAAAGGCCCGTATGTTT
ACGAATGTAGAGGTCTATTTCCCGAAGAAATATGTCGGTGAGGAGGAAGATTCGGATGATATACCTACCTGGAACTATTT
TATTGGCTTTAAGGTGGAAGATGTGAATCATGGTGAGTTGGGCGAGATTGTGGCGGTGGATGACAGTACGATGAATGTCC
TTTTTGCCATTGAGAAAGGTGGTGAGGAACTTTTGCTGCCTGCCCACGAGGAATTTATCACCAAATTGGATAAGAAAAAG
CGTTTGCTGACGGTCGAAGTACCTGATGGCTTGATATAA

Upstream 100 bases:

>100_bases
GCATACACAATATAGAGCAGATAGACCGGGGATATCAGAATATAGACCAGCGTTTGAATGCGCTTGGCGCACGTATTACT
AGAATTTAGAGAAATCAATC

Downstream 100 bases:

>100_bases
ATATAGAAGGTGCGCACGATGAAGAAAAAAGGAAGGAAAGCATTTTGGCATAATTTCAAGTTTAAGTATAAACTGACCAT
TACCAATGAAAATACGTTGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MIKKDEVFKIGIFNKPHGVKGEISFTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFRSDTTALVKLEGVDTSEKARMF
TNVEVYFPKKYVGEEEDSDDIPTWNYFIGFKVEDVNHGELGEIVAVDDSTMNVLFAIEKGGEELLLPAHEEFITKLDKKK
RLLTVEVPDGLI

Sequences:

>Translated_172_residues
MIKKDEVFKIGIFNKPHGVKGEISFTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFRSDTTALVKLEGVDTSEKARMF
TNVEVYFPKKYVGEEEDSDDIPTWNYFIGFKVEDVNHGELGEIVAVDDSTMNVLFAIEKGGEELLLPAHEEFITKLDKKK
RLLTVEVPDGLI
>Mature_172_residues
MIKKDEVFKIGIFNKPHGVKGEISFTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFRSDTTALVKLEGVDTSEKARMF
TNVEVYFPKKYVGEEEDSDDIPTWNYFIGFKVEDVNHGELGEIVAVDDSTMNVLFAIEKGGEELLLPAHEEFITKLDKKK
RLLTVEVPDGLI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BACV8 (A6L0W6)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001298952.1
- ProteinModelPortal:   A6L0W6
- STRING:   A6L0W6
- GeneID:   5302615
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_1649
- NMPDR:   fig|435590.6.peg.1554
- eggNOG:   NOG83873
- HOGENOM:   HBG703775
- OMA:   FMERRYF
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19761; Mature: 19761

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKDEVFKIGIFNKPHGVKGEISFTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFRS
CCCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCC
DTTALVKLEGVDTSEKARMFTNVEVYFPKKYVGEEEDSDDIPTWNYFIGFKVEDVNHGEL
CCEEEEEEECCCCCCCCEEEEEEEEEECHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCC
GEIVAVDDSTMNVLFAIEKGGEELLLPAHEEFITKLDKKKRLLTVEVPDGLI
CCEEEECCCCEEEEEEEECCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MIKKDEVFKIGIFNKPHGVKGEISFTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFRS
CCCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCC
DTTALVKLEGVDTSEKARMFTNVEVYFPKKYVGEEEDSDDIPTWNYFIGFKVEDVNHGEL
CCEEEEEEECCCCCCCCEEEEEEEEEECHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCC
GEIVAVDDSTMNVLFAIEKGGEELLLPAHEEFITKLDKKKRLLTVEVPDGLI
CCEEEECCCCEEEEEEEECCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA