Click here to switch to the map view.

The map label for this gene is ycgM [C]

Identifier: 150004197

GI number: 150004197

Start: 2122693

End: 2123310

Strand: Direct

Name: ycgM [C]

Synonym: BVU_1638

Alternate gene names: 150004197

Gene position: 2122693-2123310 (Clockwise)

Preceding gene: 150004196

Following gene: 150004198

Centisome position: 41.11

GC content: 42.72

Gene sequence:

>618_bases
ATGAAGATTATAGCCGTAGGAATGAACTACGTTGCACATTGCCACGAGTTACATGCTGATGAAAAATTACCGGAAGAACC
GGTTATTTTTATGAAACCGGATTCGGCTCTGCTGAAAGACAGCAAGCCGTTTTTTATTCCTGATTTTTCTCAGCAGGTGG
ATTATGAGACAGAATTGGTAGTACGTATTAATCGTTTGGGAAAGAATATTGCTCCGCGTTTTGCCAGTCGGTATTATGAT
GCGGTGACGGTAGGAATAGATTTTACGGCACGTGACCTTCAGCGGCGGTTCCGGGAGGAAGGCAAGCCTTGGGAGCTGTG
TAAAGGGTTTGATAGCTCGGCTGCCATAGGTGATTTTGTGCCGGTAGACAGATTTAAGGATATACAGAATTTAAACTTTC
ATTTGGATATAGATGGAAAAACAGTGCAGAGAGGCAACACTGCGGATATGTTGTTTAAGGTGGATGAGATAATTGCATAC
GTTAGTCGGTTTTTTACATTAAAGATTGGAGATTTGCTCTATACGGGGACTCCTGTGGGAGTAGGGCCAGTCGGCATAGG
ACAGCATTTGCAGGGGTATTTGGAAGGTGAGAAATTATTAGATTTTTATGTAAGATGA

Upstream 100 bases:

>100_bases
CGTATTCGTGTACCGGAAAATATTGTGGTGCAGAATACATCACTTTATGCTCATCTGGCTGTAATGTTTAACAGATTAAA
TGTAATTCAAGAATAATAAT

Downstream 100 bases:

>100_bases
AAATAAGAGTAGGATTTGGATTCGATGTGCACCAACTGGTAACCGGTCGTGAACTATGGCTTGGAGGAATAAAATTTGAA
CATGAATTGGGGCTATTGGG

Product: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKIIAVGMNYVAHCHELHADEKLPEEPVIFMKPDSALLKDSKPFFIPDFSQQVDYETELVVRINRLGKNIAPRFASRYYD
AVTVGIDFTARDLQRRFREEGKPWELCKGFDSSAAIGDFVPVDRFKDIQNLNFHLDIDGKTVQRGNTADMLFKVDEIIAY
VSRFFTLKIGDLLYTGTPVGVGPVGIGQHLQGYLEGEKLLDFYVR

Sequences:

>Translated_205_residues
MKIIAVGMNYVAHCHELHADEKLPEEPVIFMKPDSALLKDSKPFFIPDFSQQVDYETELVVRINRLGKNIAPRFASRYYD
AVTVGIDFTARDLQRRFREEGKPWELCKGFDSSAAIGDFVPVDRFKDIQNLNFHLDIDGKTVQRGNTADMLFKVDEIIAY
VSRFFTLKIGDLLYTGTPVGVGPVGIGQHLQGYLEGEKLLDFYVR
>Mature_205_residues
MKIIAVGMNYVAHCHELHADEKLPEEPVIFMKPDSALLKDSKPFFIPDFSQQVDYETELVVRINRLGKNIAPRFASRYYD
AVTVGIDFTARDLQRRFREEGKPWELCKGFDSSAAIGDFVPVDRFKDIQNLNFHLDIDGKTVQRGNTADMLFKVDEIIAY
VSRFFTLKIGDLLYTGTPVGVGPVGIGQHLQGYLEGEKLLDFYVR

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI13654274, Length=202, Percent_Identity=33.6633663366337, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI66348062, Length=194, Percent_Identity=34.020618556701, Blast_Score=138, Evalue=3e-33,
Organism=Homo sapiens, GI215422413, Length=194, Percent_Identity=34.020618556701, Blast_Score=138, Evalue=3e-33,
Organism=Homo sapiens, GI156231349, Length=182, Percent_Identity=41.7582417582418, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI40786394, Length=183, Percent_Identity=41.5300546448087, Blast_Score=129, Evalue=1e-30,
Organism=Escherichia coli, GI1787428, Length=199, Percent_Identity=39.1959798994975, Blast_Score=154, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI17557057, Length=190, Percent_Identity=35.2631578947368, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6324161, Length=226, Percent_Identity=28.7610619469027, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI28571789, Length=204, Percent_Identity=36.2745098039216, Blast_Score=140, Evalue=5e-34,
Organism=Drosophila melanogaster, GI28572127, Length=182, Percent_Identity=33.5164835164835, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24663695, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 23339; Mature: 23339

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIAVGMNYVAHCHELHADEKLPEEPVIFMKPDSALLKDSKPFFIPDFSQQVDYETELV
CEEEEECHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCHHHCCCCHHHH
VRINRLGKNIAPRFASRYYDAVTVGIDFTARDLQRRFREEGKPWELCKGFDSSAAIGDFV
HHHHHHCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
PVDRFKDIQNLNFHLDIDGKTVQRGNTADMLFKVDEIIAYVSRFFTLKIGDLLYTGTPVG
CCHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCC
VGPVGIGQHLQGYLEGEKLLDFYVR
CCCCCHHHHHHHHHCHHHHHHHHCC
>Mature Secondary Structure
MKIIAVGMNYVAHCHELHADEKLPEEPVIFMKPDSALLKDSKPFFIPDFSQQVDYETELV
CEEEEECHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCHHHCCCCHHHH
VRINRLGKNIAPRFASRYYDAVTVGIDFTARDLQRRFREEGKPWELCKGFDSSAAIGDFV
HHHHHHCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
PVDRFKDIQNLNFHLDIDGKTVQRGNTADMLFKVDEIIAYVSRFFTLKIGDLLYTGTPVG
CCHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCC
VGPVGIGQHLQGYLEGEKLLDFYVR
CCCCCHHHHHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]