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The map label for this gene is yhcF [H]

Identifier: 150004182

GI number: 150004182

Start: 2108571

End: 2108936

Strand: Direct

Name: yhcF [H]

Synonym: BVU_1623

Alternate gene names: 150004182

Gene position: 2108571-2108936 (Clockwise)

Preceding gene: 150004181

Following gene: 150004184

Centisome position: 40.84

GC content: 40.98

Gene sequence:

>366_bases
ATGAAATTTAAAGAAAGTAAATCCATTTACTTGCAGATAGCTGACCGGATATGTGATGAAATCCTGCAAGGACAATATAC
GGAAGAAGAGCGTATTCCATCGGTCAGAGAATACGCCGCCACAGTGGAGGTGAATGCAAATACGGTGGTCCGCACGTATG
ATTACCTTCAGGGACAAGAGATCATTCACAATAAACGCGGCATTGGTTATTTTGTATCGGCAGGGGCTAAAGACCGGATT
ATTGCTTTACGGAAAAATACATTCCTGCATGAAGACCTGCCTGAGTTTTTCAGACAAGTGAAGACATTGGATATTCCCAT
GAAGGAGATAGAAAAAATGTATAAGGAATATCTGACTCAACAATGA

Upstream 100 bases:

>100_bases
TAGGGGTGGCGTTCTTCAGTGCATTCACCATGTTCAACTGGTGGCTGAGTTACCGGCTCTTTACCCGTTCACAAGTTATT
AAACCCAAATTCCGTTTGCT

Downstream 100 bases:

>100_bases
CACAACACCAAGCACATCTACGACAACACATACACAACATCGGTTAGATAAAGAAATCCCGGCAGAGCGATGACTCGCCG
GGATTTCTTATATCCGGTTA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MKFKESKSIYLQIADRICDEILQGQYTEEERIPSVREYAATVEVNANTVVRTYDYLQGQEIIHNKRGIGYFVSAGAKDRI
IALRKNTFLHEDLPEFFRQVKTLDIPMKEIEKMYKEYLTQQ

Sequences:

>Translated_121_residues
MKFKESKSIYLQIADRICDEILQGQYTEEERIPSVREYAATVEVNANTVVRTYDYLQGQEIIHNKRGIGYFVSAGAKDRI
IALRKNTFLHEDLPEFFRQVKTLDIPMKEIEKMYKEYLTQQ
>Mature_121_residues
MKFKESKSIYLQIADRICDEILQGQYTEEERIPSVREYAATVEVNANTVVRTYDYLQGQEIIHNKRGIGYFVSAGAKDRI
IALRKNTFLHEDLPEFFRQVKTLDIPMKEIEKMYKEYLTQQ

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14300; Mature: 14300

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKESKSIYLQIADRICDEILQGQYTEEERIPSVREYAATVEVNANTVVRTYDYLQGQE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHEEEECCCEEEEHHHHHCCHH
IIHNKRGIGYFVSAGAKDRIIALRKNTFLHEDLPEFFRQVKTLDIPMKEIEKMYKEYLTQ
HHHCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q
C
>Mature Secondary Structure
MKFKESKSIYLQIADRICDEILQGQYTEEERIPSVREYAATVEVNANTVVRTYDYLQGQE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHEEEECCCEEEEHHHHHCCHH
IIHNKRGIGYFVSAGAKDRIIALRKNTFLHEDLPEFFRQVKTLDIPMKEIEKMYKEYLTQ
HHHCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]