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The map label for this gene is kdsD [H]

Identifier: 150003839

GI number: 150003839

Start: 1710646

End: 1711248

Strand: Direct

Name: kdsD [H]

Synonym: BVU_1271

Alternate gene names: 150003839

Gene position: 1710646-1711248 (Clockwise)

Preceding gene: 150003838

Following gene: 150003840

Centisome position: 33.13

GC content: 42.12

Gene sequence:

>603_bases
ATGATGACATCTATACACGAATTGTTGCAGAAAGAGGCTCAGGCTGTTTTGAATATTCCTATAACTGATGCTTATGAGAA
AGCAGTGGAATTGATAGTTGAGCAAATACACCGTAAAAAAGGAAAGCTGGTGACTACCGGTATGGGTAAGGCCGGACAGA
TAGCTATGAATATAGCTACGACTTTTTGCTCTACAGGTATTCCGGCAGTGTTTTTACATCCCAGCGAAGCCCAACATGGG
GATTTGGGGATTTTGCAGGAGAATGATTTGCTGCTTCTGATTTCTAATTCAGGAAAAACCCGTGAAATTGTGGAACTGAC
ACAACTTGCACATAATTTGAACCCAAATTTGAAATATATTGTTATTACCGGAAATGCGGATAGTCCATTGGCCCGGGAGT
CTGATATTTGTTTATGCACCGGGCATCCTGATGAAGTGTGTGCTTTGGGTATGACCCCCACAACTTCAACTACAGTTATG
ACCGTGATAGGTGATATTTTGGTAGTGGAAACCATGAAAAAGACCGGTTTTACCATCGAAGAGTATAGCAAACGCCATCA
TGGAGGGTACTTAGGTGAGCGTTCACGCGAGTTAAGTAAGTAA

Upstream 100 bases:

>100_bases
GGCAGCATTTTGCCCATCATCCGTTGAACAGTTATTTTGCTGTTGCCAATGACTTGAGAGAACTAACCGAACTACTTAAA
TAATATTCATGTAACCTATT

Downstream 100 bases:

>100_bases
AATAAAATAGAACCGGAACGCAAAGGACACAAATAATACAAATAAAATTTTATTAAAGGATTTGTGTCCTTTGTGTTCCG
GTTCTATGTATATAAATTGT

Product: putative sugar isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MMTSIHELLQKEAQAVLNIPITDAYEKAVELIVEQIHRKKGKLVTTGMGKAGQIAMNIATTFCSTGIPAVFLHPSEAQHG
DLGILQENDLLLLISNSGKTREIVELTQLAHNLNPNLKYIVITGNADSPLARESDICLCTGHPDEVCALGMTPTTSTTVM
TVIGDILVVETMKKTGFTIEEYSKRHHGGYLGERSRELSK

Sequences:

>Translated_200_residues
MMTSIHELLQKEAQAVLNIPITDAYEKAVELIVEQIHRKKGKLVTTGMGKAGQIAMNIATTFCSTGIPAVFLHPSEAQHG
DLGILQENDLLLLISNSGKTREIVELTQLAHNLNPNLKYIVITGNADSPLARESDICLCTGHPDEVCALGMTPTTSTTVM
TVIGDILVVETMKKTGFTIEEYSKRHHGGYLGERSRELSK
>Mature_200_residues
MMTSIHELLQKEAQAVLNIPITDAYEKAVELIVEQIHRKKGKLVTTGMGKAGQIAMNIATTFCSTGIPAVFLHPSEAQHG
DLGILQENDLLLLISNSGKTREIVELTQLAHNLNPNLKYIVITGNADSPLARESDICLCTGHPDEVCALGMTPTTSTTVM
TVIGDILVVETMKKTGFTIEEYSKRHHGGYLGERSRELSK

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=164, Percent_Identity=45.1219512195122, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87082151, Length=196, Percent_Identity=32.6530612244898, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 21797; Mature: 21797

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTSIHELLQKEAQAVLNIPITDAYEKAVELIVEQIHRKKGKLVTTGMGKAGQIAMNIAT
CCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
TFCSTGIPAVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPNLKYI
HHHHCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
VITGNADSPLARESDICLCTGHPDEVCALGMTPTTSTTVMTVIGDILVVETMKKTGFTIE
EEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
EYSKRHHGGYLGERSRELSK
HHHHHHCCCCCCCHHHHCCC
>Mature Secondary Structure
MMTSIHELLQKEAQAVLNIPITDAYEKAVELIVEQIHRKKGKLVTTGMGKAGQIAMNIAT
CCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
TFCSTGIPAVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPNLKYI
HHHHCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
VITGNADSPLARESDICLCTGHPDEVCALGMTPTTSTTVMTVIGDILVVETMKKTGFTIE
EEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
EYSKRHHGGYLGERSRELSK
HHHHHHCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]