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The map label for this gene is xyn11A [H]

Identifier: 150003673

GI number: 150003673

Start: 1471484

End: 1472095

Strand: Direct

Name: xyn11A [H]

Synonym: BVU_1104

Alternate gene names: 150003673

Gene position: 1471484-1472095 (Clockwise)

Preceding gene: 150003672

Following gene: 150003682

Centisome position: 28.5

GC content: 46.9

Gene sequence:

>612_bases
ATGTTTATAGAACAACCCCCGCTGATACTCCGCTGGCTTTATCCACGCGCCTTCTGGCGAATGGACAAGAATGAAAAAGC
GGTCTATCTGACTTTCGATGACGGGCCGATTCCCGAAATCACACCGTGGGTACTCGATTTATTAGACAAGTACAATATCA
AGGCTACCTTCTTTTTGGTGGGCGACAATGTGCGCAAGCATCCCAAGGAATTCCAGATGATTGTAGAACGGGGACATCGT
TTGGGAAATCATACTTTTAACCATATCCGGGGATTCGAATACCGAAGCAAGAACTATCTGGCCAATACGGACAAAGCAAA
CGAGCTGATCCATACCAACCTGTTCCGTCCGCCACATGGCCACATGCGCTGGATGCAGTACATGGTGCTGCGGCATAAAT
ACCAGATCGTAATGTGGGACTTGGTTACCCGTGACTATAGCAACAAGCTGAATGGAAGACAGGTACTGAGGAAGGTAAAA
CATTATGTGAGGAATGGCTCCATCATTACTTTCCATGACTCCATCAAGGCAGAGAAAAACATGAAATACGCCTTGCCCCG
GGCCATAGAATGGCTGTTGGAACAAGGCTATGAATTCAAGGTATTTGACTGA

Upstream 100 bases:

>100_bases
CGTGTAGGCGGCGGAGCAGGCAGAAAGTAAATAAAAGGTGTGGATTCTGCGGTGAATCCACACCTTTATATTTGTATAAC
CAACAAAAGCACACACATTC

Downstream 100 bases:

>100_bases
TAAAGCCAAATACCTTGTTTTTTTCGTGGCGTATACGCATACCCTCTTGTATATGTATCATTTTATGGCAACTGCCAATG
GATTACGTATCTTCCGGGCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MFIEQPPLILRWLYPRAFWRMDKNEKAVYLTFDDGPIPEITPWVLDLLDKYNIKATFFLVGDNVRKHPKEFQMIVERGHR
LGNHTFNHIRGFEYRSKNYLANTDKANELIHTNLFRPPHGHMRWMQYMVLRHKYQIVMWDLVTRDYSNKLNGRQVLRKVK
HYVRNGSIITFHDSIKAEKNMKYALPRAIEWLLEQGYEFKVFD

Sequences:

>Translated_203_residues
MFIEQPPLILRWLYPRAFWRMDKNEKAVYLTFDDGPIPEITPWVLDLLDKYNIKATFFLVGDNVRKHPKEFQMIVERGHR
LGNHTFNHIRGFEYRSKNYLANTDKANELIHTNLFRPPHGHMRWMQYMVLRHKYQIVMWDLVTRDYSNKLNGRQVLRKVK
HYVRNGSIITFHDSIKAEKNMKYALPRAIEWLLEQGYEFKVFD
>Mature_203_residues
MFIEQPPLILRWLYPRAFWRMDKNEKAVYLTFDDGPIPEITPWVLDLLDKYNIKATFFLVGDNVRKHPKEFQMIVERGHR
LGNHTFNHIRGFEYRSKNYLANTDKANELIHTNLFRPPHGHMRWMQYMVLRHKYQIVMWDLVTRDYSNKLNGRQVLRKVK
HYVRNGSIITFHDSIKAEKNMKYALPRAIEWLLEQGYEFKVFD

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=168, Percent_Identity=30.3571428571429, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 24627; Mature: 24627

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIEQPPLILRWLYPRAFWRMDKNEKAVYLTFDDGPIPEITPWVLDLLDKYNIKATFFLV
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEE
GDNVRKHPKEFQMIVERGHRLGNHTFNHIRGFEYRSKNYLANTDKANELIHTNLFRPPHG
CCCHHHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH
HMRWMQYMVLRHKYQIVMWDLVTRDYSNKLNGRQVLRKVKHYVRNGSIITFHDSIKAEKN
HHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
MKYALPRAIEWLLEQGYEFKVFD
CHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MFIEQPPLILRWLYPRAFWRMDKNEKAVYLTFDDGPIPEITPWVLDLLDKYNIKATFFLV
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEE
GDNVRKHPKEFQMIVERGHRLGNHTFNHIRGFEYRSKNYLANTDKANELIHTNLFRPPHG
CCCHHHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH
HMRWMQYMVLRHKYQIVMWDLVTRDYSNKLNGRQVLRKVKHYVRNGSIITFHDSIKAEKN
HHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
MKYALPRAIEWLLEQGYEFKVFD
CHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA