Click here to switch to the map view.

The map label for this gene is dedA [C]

Identifier: 148828382

GI number: 148828382

Start: 1836314

End: 1836919

Strand: Direct

Name: dedA [C]

Synonym: CGSHiGG_09945

Alternate gene names: 148828382

Gene position: 1836314-1836919 (Clockwise)

Preceding gene: 148828374

Following gene: 148828385

Centisome position: 97.3

GC content: 33.99

Gene sequence:

>606_bases
ATGGAATTTTTAATTGGATTTTTTACTGAATATGGTTATTGGGCTGTTCTTTTTGTTTTAATTATTTGTGGATTTGGTGT
ACCTATTCCAGAAGATATAACATTAGTTTCAGGTGGTGTCATTGCGGGGCTTTATCCAGAAAATGTCAATTCTCATTTGA
TGTTACTGGTTAGTATGATTGGTGTGCTTGCTGGCGATTCCTGTATGTATTGGCTTGGTCGAATTTATGGCACGAAAATT
TTACGTTTCCGACCAATACGTAGAATCGTAACATTACAGCGTTTAAGAATGGTGCGTGAAAAATTCAGTCAATATGGCAA
TCGAGTACTGTTTGTTGCACGATTTTTACCCGGTTTACGTGCTCCAATTTATATGGTATCAGGTATTACACGCCGTGTAA
GTTATGTTCGTTTTGTTTTAATAGATTTCTGTGCTGCGATTATTTCTGTACCTATTTGGATTTATCTTGGGGAATTGGGG
GCTAAAAATTTAGATTGGCTACATACACAAATTCAAAAAGGTCAAATTGTGATTTATATATTTATTGGGTTACTTGTACT
ATTCTTTTTTTGGAAATGGAAAAAATCTAAAAAATCAACGCAATAA

Upstream 100 bases:

>100_bases
TTTCAAATCAAACTTTTTTCTAGGCTTTTTGATTTGAAAAGATTAAAATGTGAACCAATTTTTTATCACATCTATTAATA
TAATAAAAAAGCAGGAACAA

Downstream 100 bases:

>100_bases
TAGAATAATAAACGGCTAAAAATATTTCTATTTTTAGCCGCACTTTTTAATTTTCTTCTTTATTTTCTTTAAATAAGCCT
GATGCACCCTCCGAATAATC

Product: membrane-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MEFLIGFFTEYGYWAVLFVLIICGFGVPIPEDITLVSGGVIAGLYPENVNSHLMLLVSMIGVLAGDSCMYWLGRIYGTKI
LRFRPIRRIVTLQRLRMVREKFSQYGNRVLFVARFLPGLRAPIYMVSGITRRVSYVRFVLIDFCAAIISVPIWIYLGELG
AKNLDWLHTQIQKGQIVIYIFIGLLVLFFFWKWKKSKKSTQ

Sequences:

>Translated_201_residues
MEFLIGFFTEYGYWAVLFVLIICGFGVPIPEDITLVSGGVIAGLYPENVNSHLMLLVSMIGVLAGDSCMYWLGRIYGTKI
LRFRPIRRIVTLQRLRMVREKFSQYGNRVLFVARFLPGLRAPIYMVSGITRRVSYVRFVLIDFCAAIISVPIWIYLGELG
AKNLDWLHTQIQKGQIVIYIFIGLLVLFFFWKWKKSKKSTQ
>Mature_201_residues
MEFLIGFFTEYGYWAVLFVLIICGFGVPIPEDITLVSGGVIAGLYPENVNSHLMLLVSMIGVLAGDSCMYWLGRIYGTKI
LRFRPIRRIVTLQRLRMVREKFSQYGNRVLFVARFLPGLRAPIYMVSGITRRVSYVRFVLIDFCAAIISVPIWIYLGELG
AKNLDWLHTQIQKGQIVIYIFIGLLVLFFFWKWKKSKKSTQ

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=155, Percent_Identity=28.3870967741935, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23202; Mature: 23202

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLIGFFTEYGYWAVLFVLIICGFGVPIPEDITLVSGGVIAGLYPENVNSHLMLLVSMI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHH
GVLAGDSCMYWLGRIYGTKILRFRPIRRIVTLQRLRMVREKFSQYGNRVLFVARFLPGLR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCC
APIYMVSGITRRVSYVRFVLIDFCAAIISVPIWIYLGELGAKNLDWLHTQIQKGQIVIYI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH
FIGLLVLFFFWKWKKSKKSTQ
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEFLIGFFTEYGYWAVLFVLIICGFGVPIPEDITLVSGGVIAGLYPENVNSHLMLLVSMI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHH
GVLAGDSCMYWLGRIYGTKILRFRPIRRIVTLQRLRMVREKFSQYGNRVLFVARFLPGLR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCC
APIYMVSGITRRVSYVRFVLIDFCAAIISVPIWIYLGELGAKNLDWLHTQIQKGQIVIYI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH
FIGLLVLFFFWKWKKSKKSTQ
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]