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The map label for this gene is yciO [C]

Identifier: 148828348

GI number: 148828348

Start: 1792634

End: 1793257

Strand: Direct

Name: yciO [C]

Synonym: CGSHiGG_09710

Alternate gene names: 148828348

Gene position: 1792634-1793257 (Clockwise)

Preceding gene: 148828346

Following gene: 148828349

Centisome position: 94.99

GC content: 39.26

Gene sequence:

>624_bases
ATGAGCCAATTTTTCTATATCCACCCTGAAAATCCACAAGTGCGCTTGATTAATCAAGCCGTAGAGATTTTACAAAAAGG
CGGTGTGATTGTGTATCCAACGGATTCGGGATATGCCTTGGGCTGTATGATGGGCGATAAACACGCAATGGATCGCATTG
TAGCAATTCGTAAATTGCCTGAAGGACATAATTTTACCTTGGTGTGTAGCGATTTGTCGGAACTTTCAACCTATGCAAGG
GTAAATAATACCGCTTATCGTTTGATTAAAAATAATACGCCAGGGCGTTATACTTTTATTCTTACAGCAACGAAAGAATT
ACCTCGCCGTTTAATGACATCAAAACGTAAAACCATTGGTTTACGCGTACCAGATAATAAAATTGCTTTAGATTTGCTTT
CAGCCTTAGGTGAGCCGATTTTATCTTGTTCGTTAATGTTGCCGAATGAAGAACATACTACGCAATCCGATCCTGAAGAA
ATTCGTGATCGTTTGGAACATCAAGTGGATTTAATTATTCATGGTGGATATTTAGGGCAAGAGCCTACAACAGTGGTAGA
TTTAACGGAAGAATCACCAGTGATTTTGCGCGAAGGAAGTGGAAGTACTGCTCCTTTTATTTAA

Upstream 100 bases:

>100_bases
GCGTAGATTGATTCCCTGCACCTTTATTTTTATATGCTCGCCATTATAAAGTGAGTGCAAAACTGCTATAATCAGCGCAC
ACTTTTTAAGGAAGAAACAC

Downstream 100 bases:

>100_bases
CTTATAGACGCTTGTGAAAGCGACCTTTCCATTATTCAAGGAAAACAATGAAACCTAGTCAAAAACAAACTCAAAGACAA
CCGCACTTTTCCAAAGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSQFFYIHPENPQVRLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTYAR
VNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEE
IRDRLEHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI

Sequences:

>Translated_207_residues
MSQFFYIHPENPQVRLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTYAR
VNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEE
IRDRLEHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI
>Mature_206_residues
SQFFYIHPENPQVRLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTYARV
NNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEI
RDRLEHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=207, Percent_Identity=73.4299516908213, Blast_Score=322, Evalue=1e-89,
Organism=Escherichia coli, GI2367210, Length=140, Percent_Identity=27.1428571428571, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23121; Mature: 22990

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYIHPENPQVRLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLP
CCCEEEEECCCCCEEHHHHHHHHHHHCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
EGHNFTLVCSDLSELSTYARVNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIG
CCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHCCCCEEE
LRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGYLGQ
EECCCCHHHHHHHHHHCHHHHEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCC
EPTTVVDLTEESPVILREGSGSTAPFI
CCCEEEEECCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFYIHPENPQVRLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLP
CCEEEEECCCCCEEHHHHHHHHHHHCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
EGHNFTLVCSDLSELSTYARVNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIG
CCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHCCCCEEE
LRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGYLGQ
EECCCCHHHHHHHHHHCHHHHEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCC
EPTTVVDLTEESPVILREGSGSTAPFI
CCCEEEEECCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]