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The map label for this gene is oppB [H]

Identifier: 148828284

GI number: 148828284

Start: 1719069

End: 1720694

Strand: Reverse

Name: oppB [H]

Synonym: CGSHiGG_09280

Alternate gene names: 148828284

Gene position: 1720694-1719069 (Counterclockwise)

Preceding gene: 148828286

Following gene: 148828283

Centisome position: 91.18

GC content: 40.65

Gene sequence:

>1626_bases
ATGCAACACAAACTACTCTTCTCTGCAATCGCTCTTGCTCTTTCCTATTCTGCACAAGCAGTTATAGTGCCTGAAGGAAC
ACAATTAGATGAAAAACAACATATCGTCATCAATAACGGAGCTGAACCACAAAGTTTTGACCCACACAAAACCGAAGGTG
TGCCAGAATCTAACGTTGCTTATCAATTACTTGAAGGCTTAGTCACCTCAGACTCTGAAGGTAAACTTCAACCGGGTGTG
GCTGAAAGCTGGGAAAATACACCTGACTTCAAAACCTGGACATTCCATTTACGTAAAGATGCTAAATGGTCAAACGGAGA
TCCTGTTACTGCACACGATTTCGTGTTTGCGTGGCGTCGTTTAGTGGATCCTGCAACTGCTGCACCTTATGCGAGTTACT
TAAGTTATTTACAAGTTGAAAATGCGCAAGACATTATTGACGGTAAGAAAAAACCGGCTGAATTAGGCGTGGAAGCAAAA
GATGATTACACCTTTGTGGTTCATGCAACCAATCCTGTGCCTTATGCAGTCAGTTTAACGACTCACCAATCCTTATTGCC
ATTACCACAAAAAGTAGTCGAAAAATTGGGTGATGCATGGGTGAAAAAAGAAAACTACGTGGGTAACGGTGCGTATAAGC
TGGCTAACCACATCATTAACGAAAAAATCGAATTTGAACGTAACCCACTTTATTGGAACGATAAAGAAACCGTAATCAAT
AGCGCGACATTCCTCGCCATTGAAAACCCAAGTACCGATGTAGCGCGTTATCGTGCGGGCGATTTAGACATGACCAGTTA
TGGTTTACCGCCAGAACAATTCGCTAAATTACAAAAAGAATTGCCAGGCGAAGTATACGTTACTCGTACCCTAGGAACTT
ATTCTTATGAATTAAACAATAAGAAAGCACCTTTTGATAACGTGAATATTCGTAAAGCCTTGAACTTATCCCTTGATCGT
AATGTGATCACCGATAAAGTATTGGGCCAAGGTCAAACACCAACCTATGTGTTTACTCCAACTTACATCGAAGAAGGCCA
TCTCATTCAACAACCTGCTTATTCAAAAGAACCGATGGCACAACGTAATGAAGAAGCCATTAAACTCTTAGAAGAAGCTG
GTTACAGTAAAGCGAATCCGTTGAAATTCAGCATTCTTTACAATACCAATGAAAACCACAAAAAAGTGGCGATCGCTGCA
GCATCTATGTGGAAAGCGAACACCAAAGGTTTGATTGACGTGAAATTAGAAAACCAAGAGTGGAAAACTTACATTGATAG
CCGTCGTGCAGGTCGTTACGATGCGGCACGTGCAGGATGGAGTGCGGATTACAACCAAGCAACAACATTCGGCAACTATT
TCTTATCTAATTCTAGTAACAATACCGCGAAATACGCGAACCCAGAATATGATAAAGCGATGGCAGAATCTTACGCAGCA
ACTGATGCAGAAGGTCGTGCAAAAGCTTATGCGAAAGCCGAAGAAATTCTTGCAAAAGATTACGGTATCGTACCAATCTT
TAACTATGTAAATCCACGCTTAGTGAAACCTTACGTAAAAGGTTATTCAGGCAAAGATCCACAAGATCATATTTACTTAC
GCAATCTTTATATTATTAAACATTAA

Upstream 100 bases:

>100_bases
CTTCAAATAATTTCCTGACAAATCTTTACAAAAATGAATTTTTGAGCTAATAAGTAGAAGACTTTTTATAAAAATATTGC
CTAATGACAAGGAGGCTCAA

Downstream 100 bases:

>100_bases
TTCGTTGCTCGTATTTAAGTGCGGTTAAAAATCGTCGTATTTTTTGACCGCACTTTTCGCCCATTTTGGTTGGAGTTGTT
ATGCTCAAGTTTATTTTTAA

Product: oligopeptide permease ABC transporter membrane protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGV
AESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEAK
DDYTFVVHATNPVPYAVSLTTHQSLLPLPQKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLSLDR
NVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAA
ASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDAARAGWSADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
TDAEGRAKAYAKAEEILAKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIKH

Sequences:

>Translated_541_residues
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGV
AESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEAK
DDYTFVVHATNPVPYAVSLTTHQSLLPLPQKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLSLDR
NVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAA
ASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDAARAGWSADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
TDAEGRAKAYAKAEEILAKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIKH
>Mature_541_residues
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGV
AESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEAK
DDYTFVVHATNPVPYAVSLTTHQSLLPLPQKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLSLDR
NVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAA
ASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDAARAGWSADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
TDAEGRAKAYAKAEEILAKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIKH

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=531, Percent_Identity=53.2956685499058, Blast_Score=572, Evalue=1e-164,
Organism=Escherichia coli, GI87081878, Length=546, Percent_Identity=43.2234432234432, Blast_Score=459, Evalue=1e-130,
Organism=Escherichia coli, GI1789397, Length=536, Percent_Identity=39.1791044776119, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1787762, Length=528, Percent_Identity=26.3257575757576, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789887, Length=448, Percent_Identity=25.6696428571429, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1789966, Length=568, Percent_Identity=23.7676056338028, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787052, Length=510, Percent_Identity=23.1372549019608, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787551, Length=553, Percent_Identity=21.5189873417722, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60807; Mature: 60807

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVA
CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
YQLLEGLVTSDSEGKLQPGVAESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRR
HHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
LVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEAKDDYTFVVHATNPVPYAVSLT
HCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCEEEEEC
THQSLLPLPQKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
CCCHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCEECCCHHEEC
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNN
CEEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECEEEEEECC
KKAPFDNVNIRKALNLSLDRNVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMA
CCCCCCCCCHHEEECCCCCCCHHHHHHHCCCCCCEEEECCCEECCCCEECCCCCCCCCHH
QRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAAASMWKANTKGLIDVKLENQE
HCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEHHHCCCCCCEEEEEECCCH
WKTYIDSRRAGRYDAARAGWSADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
HHHHHHHHCCCCCHHHHCCCCCCCCCHHEECCEEEECCCCCCCCCCCCHHHHHHHHHHHC
TDAEGRAKAYAKAEEILAKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIK
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECHHHCCCCCCCCCCEEEEEEEEEEE
H
C
>Mature Secondary Structure
MQHKLLFSAIALALSYSAQAVIVPEGTQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVA
CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
YQLLEGLVTSDSEGKLQPGVAESWENTPDFKTWTFHLRKDAKWSNGDPVTAHDFVFAWRR
HHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
LVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEAKDDYTFVVHATNPVPYAVSLT
HCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCEEEEEC
THQSLLPLPQKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKETVIN
CCCHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCEECCCHHEEC
SATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLQKELPGEVYVTRTLGTYSYELNN
CEEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECEEEEEECC
KKAPFDNVNIRKALNLSLDRNVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMA
CCCCCCCCCHHEEECCCCCCCHHHHHHHCCCCCCEEEECCCEECCCCEECCCCCCCCCHH
QRNEEAIKLLEEAGYSKANPLKFSILYNTNENHKKVAIAAASMWKANTKGLIDVKLENQE
HCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEHHHCCCCCCEEEEEECCCH
WKTYIDSRRAGRYDAARAGWSADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAA
HHHHHHHHCCCCCHHHHCCCCCCCCCHHEECCEEEECCCCCCCCCCCCHHHHHHHHHHHC
TDAEGRAKAYAKAEEILAKDYGIVPIFNYVNPRLVKPYVKGYSGKDPQDHIYLRNLYIIK
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECHHHCCCCCCCCCCEEEEEEEEEEE
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]