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The map label for this gene is xylR [H]

Identifier: 148828268

GI number: 148828268

Start: 1698616

End: 1699779

Strand: Reverse

Name: xylR [H]

Synonym: CGSHiGG_09180

Alternate gene names: 148828268

Gene position: 1699779-1698616 (Counterclockwise)

Preceding gene: 148828269

Following gene: 148828267

Centisome position: 90.07

GC content: 35.14

Gene sequence:

>1164_bases
ATGACGGAACAATACTACAAAATTGCCCTCTTATTTAATGCAAACAAAGTATATGATCGGCAGGTGGTGGAGGGTATTGG
ACAATATATTCAGGCATCGCAATGTATGTGGGATATTTTTGTAGAAGATGAATTTATCTATCATACTGATACTATTAATC
AACTTTCTATTGATGGCATTATTGCAGACTTTGATGATCCAAAAACTGTTGAATTATTGCAACACACTCTTATTCCCACT
ATAGCAGTTGGTGGATCTTATAAACAAGCTGATTTTTATCCGCACTTTCCTTATGTAGCAACAGATAATATGGCATTGGT
TGAAATGGCTTTATCTCATTTACAGGAGAAAGGACTGTCACAGTTTGCATTTTATGGTTTGCAAGTAAATACTCATAAGC
ATTGGTCTATAGAACGAAGAGATGCTTTTGTAGAGTTGATGGAGAAAAATCATTACCCTATTTACCTATATGAGGGTGTG
CAGGTTCATGCTCAAAATTGGTTGGAAGAGCAACAAAAGCTAATTGTCTGGTTAAAATCTCTTCCTTCTCATACTGGTAT
TATTGCTGTTACGGATGCGCGTGCTCGTCATTTATTGCAGGCTTGTGAATACAGTAAAATTGCTGTACCTGAAGAGCTTT
GTGTGGTTGGTATTGATAATGAAGAATTGATCCAATATTTATCGCGTATGTCCCTTTCCTCCGTAGAACAAGGCACGAGA
GAGATTGGTTATCAAGCTGCGAAATTATTACACAAATTACTCAATGGTCAAAAAGTTTCACATACCCCTATTTTAATTCC
ACCGATTACCGTTCACTCTCGAAATTCTACAGATTATCGATCATTAACAGATCCGCTTGTGATTCAAGCAATGCATTATA
TTCGTCATCGTGCCTGTCATCGAATTAAAGTAGAACAAGTTTTAGATCATCTTGAAACCTCACGTTCTAATCTTGAACAA
CGTTTTAAGAATGAAATGAATAAAACAATTCACCAAGTCATCCACGAAGAAAAAATTTCCCGAGCAAAGAATTTATTACA
ACAAACAGATATTTCTATTCAAGAAATTGCTGAGATTTGCGGCTATCCATCAATTCAATATTTTTACTCTGTTTTTAAGA
AAGAATTTGAAATGACTCCTAAAGAGTTTCGACTAAATTGTTAA

Upstream 100 bases:

>100_bases
GATATAAAAATGGCCAGTTATTCTGGCTATTTTTATCTTGAAGCTAAATATCTTTTCTATTATAACTTAAATAGCAATTT
CCCATAGATAAGGATATAAA

Downstream 100 bases:

>100_bases
AGGAGCATATTTTTATTCAACTCTGTGCCATAATAACAAGTATTTTTGACCGCACTTTTATCTGAAAGACAGAAAATGAA
TATTCTAATTATTGGCCCAT

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MTEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFDDPKTVELLQHTLIPT
IAVGGSYKQADFYPHFPYVATDNMALVEMALSHLQEKGLSQFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGV
QVHAQNWLEEQQKLIVWLKSLPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACHRIKVEQVLDHLETSRSNLEQ
RFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIQEIAEICGYPSIQYFYSVFKKEFEMTPKEFRLNC

Sequences:

>Translated_387_residues
MTEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFDDPKTVELLQHTLIPT
IAVGGSYKQADFYPHFPYVATDNMALVEMALSHLQEKGLSQFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGV
QVHAQNWLEEQQKLIVWLKSLPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACHRIKVEQVLDHLETSRSNLEQ
RFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIQEIAEICGYPSIQYFYSVFKKEFEMTPKEFRLNC
>Mature_386_residues
TEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFDDPKTVELLQHTLIPTI
AVGGSYKQADFYPHFPYVATDNMALVEMALSHLQEKGLSQFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQ
VHAQNWLEEQQKLIVWLKSLPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTRE
IGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACHRIKVEQVLDHLETSRSNLEQR
FKNEMNKTIHQVIHEEKISRAKNLLQQTDISIQEIAEICGYPSIQYFYSVFKKEFEMTPKEFRLNC

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=384, Percent_Identity=57.03125, Blast_Score=464, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 44961; Mature: 44830

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGI
CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCEEECCE
IADFDDPKTVELLQHTLIPTIAVGGSYKQADFYPHFPYVATDNMALVEMALSHLQEKGLS
EECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCH
QFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQVHAQNWLEEQQKLIVWLKS
HHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
CCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHH
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACH
HHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHH
RIKVEQVLDHLETSRSNLEQRFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIQEIAEIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GYPSIQYFYSVFKKEFEMTPKEFRLNC
CCCCHHHHHHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure 
TEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGI
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCEEECCE
IADFDDPKTVELLQHTLIPTIAVGGSYKQADFYPHFPYVATDNMALVEMALSHLQEKGLS
EECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCH
QFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQVHAQNWLEEQQKLIVWLKS
HHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
CCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHH
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACH
HHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHH
RIKVEQVLDHLETSRSNLEQRFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIQEIAEIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GYPSIQYFYSVFKKEFEMTPKEFRLNC
CCCCHHHHHHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]